CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_09023
(
Coccidioides immitis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CIMG_09023
T28692_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_09023T0
RRM
94
165
LYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSKGLNYGFVEYDDPGAAERAMQTLNGRRVHQSEIR
CIMG_09023T0
RRM
186
256
IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIR
CIMG_09023T0
RRM
312
376
CYVGNLTPYTTQNDLVPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Coccidioides immitis
RBPs
46 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.887
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.933
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.919
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.919
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.784
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.942
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.938
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.919
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.928
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.784
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.990
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.887
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.909
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.933
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.875
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.899
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.899
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.861
MCYG_03737
Microsporum canis
MCYG_03737
N
0.976
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.962
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.942
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.905
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.919
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.918
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.942
NCU07874
Neurospora crassa
NCU07874
N
0.947
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.900
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.976
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.923
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.942
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.887
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.933
PGTG_08590
Puccinia graminis
PGTG_08590
N
0.702
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.878
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.938
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.887
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.957
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.894
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.899
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.913
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.981
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.981
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.800
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.938
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.856
VDAG_06648
Verticillium dahliae
VDAG_06648
N
0.706