CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AO090102000222
(
Aspergillus oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAORAG00009578
T33708_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAORAP00009385
RRM
83
150
HVGNLAFDATSADISDLFVDCAVTNVRIVEDKLTKAPKGFGYVEFETVDGLKKALDLSGATLQGRTIR
Links
Other
RRM
family RBPs
Other
Aspergillus oryzae
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.000
ADR062W
Ashbya gossypii
ADR062W
N
0.000
orf19.7385
Candida albicans
orf19.7385
N
0.000
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.000
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.000
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.000
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.000
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.000
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.000
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.000
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.000
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.000
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.000
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.000
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.000
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.000
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.000
estExt_Genewise1Plus.C_chr_60126
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_60126
N
0.000
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.000
NCU05007
Neurospora crassa
NCU05007
N
0.000
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.000
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.000
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.000
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.000
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.000
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.000
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.000
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.000
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.000
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.000
SPCC1739.01
Schizosaccharomyces pombe
SPCC1739.01
N
0.000
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.000
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.000
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.000
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.000
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.000
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.000
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.000
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.000
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.000