rbfox1l (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000021184 T36102_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.928
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.913
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.913
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.841
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000016637 RRM 149 217

Links

Other RRM family RBPs
Other Danio rerio RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG08763 Caenorhabditis briggsae CBG08763 N 0.000
CJA15515 Caenorhabditis japonica CJA15515 N 0.000
CJA17375 Caenorhabditis japonica CJA17375 N 0.000
CJA17739 Caenorhabditis japonica CJA17739 N 0.000
CJA18092 Caenorhabditis japonica CJA18092 N 0.000
CJA21035 Caenorhabditis japonica CJA21035 N 0.000
CJA21290 Caenorhabditis japonica CJA21290 N 0.000
CJA23650 Caenorhabditis japonica CJA23650 N 0.000
CJA26146 Caenorhabditis japonica CJA26146 N 0.000
CJA27243 Caenorhabditis japonica CJA27243 N 0.000
CJA28002 Caenorhabditis japonica CJA28002 N 0.000
CJA28132 Caenorhabditis japonica CJA28132 N 0.000
CJA29053 Caenorhabditis japonica CJA29053 N 0.000
CJA15447 Caenorhabditis japonica CJA15447 N 0.000
CJA14117 Caenorhabditis japonica CJA14117 N 0.000
CJA00525 Caenorhabditis japonica CJA00525 N 0.000
CJA02670 Caenorhabditis japonica CJA02670 N 0.000
CJA02757 Caenorhabditis japonica CJA02757 N 0.000
CJA03993 Caenorhabditis japonica CJA03993 N 0.000
CJA05078 Caenorhabditis japonica CJA05078 N 0.000
CJA07934 Caenorhabditis japonica CJA07934 N 0.000
CJA09584 Caenorhabditis japonica CJA09584 N 0.000
CJA10177 Caenorhabditis japonica CJA10177 N 0.000
CJA11030 Caenorhabditis japonica CJA11030 N 0.000
CJA12868 Caenorhabditis japonica CJA12868 N 0.000
CJA13138 Caenorhabditis japonica CJA13138 N 0.000
CJA13676 Caenorhabditis japonica CJA13676 N 0.000
CRE29150 Caenorhabditis remanei CRE29150 N 0.000
CRE19609 Caenorhabditis remanei CRE19609 N 0.000
CRE13684 Caenorhabditis remanei CRE13684 N 0.000
CRE09308 Caenorhabditis remanei CRE09308 N 0.000
CRE03331 Caenorhabditis remanei CRE03331 N 0.000
CRE30341 Caenorhabditis remanei CRE30341 N 0.000