U2AF2 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000005514 T42238_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.952
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000013250 RRM 158 232
ENSTRUP00000013250 RRM 268 338
ENSTRUP00000013250 RRM 402 463
ENSTRUP00000013251 RRM 150 224
ENSTRUP00000013251 RRM 260 330
ENSTRUP00000013251 RRM 400 461
ENSTRUP00000013252 RRM 138 212
ENSTRUP00000013252 RRM 248 328
ENSTRUP00000013252 RRM 392 453

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.721
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.769
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.769
AAEL002818 Aedes aegypti AAEL002818 I 0.774
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.952
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.952
AGAP002908 Anopheles gambiae AGAP002908 I 0.769
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.788
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.784
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.957
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.812
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.947
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.779
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.952
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.771
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.770
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.774
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.774
u2af2b Danio rerio ENSDARG00000011740 I 0.952
u2af2a Danio rerio ENSDARG00000012505 I 0.976
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.812
GF19596 Drosophila ananassae FBgn0096603 I 0.779
GG19328 Drosophila erecta FBgn0111532 I 0.779
GH12033 Drosophila grimshawi FBgn0119512 I 0.769
U2af50 Drosophila melanogaster FBgn0005411 D 0.779
GI14308 Drosophila mojavensis FBgn0137061 I 0.769
GL15893 Drosophila persimilis FBgn0153497 I 0.779
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.779
GM13406 Drosophila sechellia FBgn0168337 I 0.779
GD24494 Drosophila simulans FBgn0195829 I 0.779
GJ19364 Drosophila virilis FBgn0206507 I 0.716
GK10063 Drosophila willistoni FBgn0212078 I 0.779
GE15975 Drosophila yakuba FBgn0233531 I 0.779
LOC100050729 Equus caballus ENSECAG00000010110 I 0.952
U2AF2 Felis catus ENSFCAG00000011504 I 0.760
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.876
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.990
185543 Helobdella robusta 185543 I 0.763
U2AF2 Homo sapiens ENSG00000063244 D 0.952
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.812
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.952
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.817
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.952
U2af2 Mus musculus ENSMUSG00000030435 I 0.952
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.793
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.742
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.986
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.812
PHUM460480 Pediculus humanus PHUM460480 I 0.769
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.947
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.952
Smp_019690 Schistosoma mansoni Smp_019690 I 0.745
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.875
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.857
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.995
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.952
AAH44032 Xenopus laevis AAH44032 I 0.957
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.957