CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNOT4
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000016861
T42366_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
0.987
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.753
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.714
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000043205
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSTRUP00000043206
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSTRUP00000043207
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_092660
Aspergillus clavatus
CADACLAG00008386
N
0.000
AFLA_043160
Aspergillus flavus
CADAFLAG00005643
N
0.000
ANIA_04595
Aspergillus nidulans
CADANIAG00005841
N
0.000
An07g06750
Aspergillus niger
CADANGAG00005948
N
0.000
NFIA_034530
Neosartorya fischeri
CADNFIAG00002955
N
0.000
Pc20g04370
Penicillium chrysogenum
Pc20g04370
N
0.000