rbm39 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000007434 T42849_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000016191 RRM 156 224
ENSXETP00000016191 RRM 253 323
ENSXETP00000016191 RRM 457 514

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.755
AAEL005046 Aedes aegypti AAEL005046 N 0.761
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.965
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.965
AGAP008433 Anopheles gambiae AGAP008433 N 0.745
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.765
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.965
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.965
RBM39 Canis familiaris ENSCAFG00000008327 N 0.965
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.764
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.764
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.764
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.764
rbm39b Danio rerio ENSDARG00000041853 N 0.884
rbm39a Danio rerio ENSDARG00000011613 N 0.884
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.754
GF14957 Drosophila ananassae FBgn0091982 N 0.724
GG10454 Drosophila erecta FBgn0102763 N 0.724
GH13506 Drosophila grimshawi FBgn0120982 N 0.720
CG11266 Drosophila melanogaster FBgn0031883 N 0.719
GI10246 Drosophila mojavensis FBgn0133011 N 0.715
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.719
GM16278 Drosophila sechellia FBgn0171194 N 0.719
GD23448 Drosophila simulans FBgn0194830 N 0.719
GK15272 Drosophila willistoni FBgn0217277 N 0.725
GE14328 Drosophila yakuba FBgn0231943 N 0.729
RBM39 Equus caballus ENSECAG00000013423 N 0.965
RBM39 Gallus gallus ENSGALG00000001550 N 0.960
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.939
RBM39 Homo sapiens ENSG00000131051 N 0.965
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.768
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.965
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.955
RBM39 Microcebus murinus ENSMICG00000001668 N 0.965
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.955
Rbm39 Mus musculus ENSMUSG00000027620 N 0.965
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.965
RBM23 Oryzias latipes ENSORLG00000010370 N 0.879
RBM23 Oryzias latipes ENSORLG00000009919 N 0.894
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.965
PHUM394230 Pediculus humanus PHUM394230 N 0.775
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.965
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.965
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.965
RBM39 Sorex araneus ENSSARG00000007673 N 0.965
RBM39 Sus scrofa ENSSSCG00000007309 N 0.965
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.960
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.874
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.965
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.874
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.965
AAH75146 Xenopus laevis AAH75146 N 0.970
AAH77813 Xenopus laevis AAH77813 N 0.985