LOC_Os11g07490 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os11g07490 T45152_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g07490.1 RRM 14 84

Links

Other RRM family RBPs
Other Oryza sativa RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.789
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.789
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.775
AB08285.1 Alternaria brassicicola AB08285.1 N 0.000
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.789
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.789
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.915
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.915
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.789
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.789
BC1G_15665 Botrytis cinerea BC1G_15665 N 0.000
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.817
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.817
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.775
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.789
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.789
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.775
PK22244.1 Cannabis sativa PK22244.1 N 0.944
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.775
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.789
CHGG_01583 Chaetomium globosum CHGG_01583 N 0.000
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.775
estExt_fgenesh1_pg.C_160182 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160182 N 0.000
GLRG_10397 Colletotrichum graminicola GLRG_10397 N 0.000
e_gw1.6.1433.1 Cryphonectria parasitica e_gw1.6.1433.1 N 0.000
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.944
cstf2 Danio rerio ENSDARG00000044009 N 0.775
GF16912 Drosophila ananassae FBgn0093932 N 0.746
GG22991 Drosophila erecta FBgn0115148 N 0.746
GH18352 Drosophila grimshawi FBgn0125820 N 0.746
CstF-64 Drosophila melanogaster FBgn0027841 N 0.746
GI23336 Drosophila mojavensis FBgn0146063 N 0.746
GL24357 Drosophila persimilis FBgn0161947 N 0.746
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.746
GM17877 Drosophila sechellia FBgn0172784 N 0.746
GD19237 Drosophila simulans FBgn0190742 N 0.746
GJ10336 Drosophila virilis FBgn0197622 N 0.746
GK14167 Drosophila willistoni FBgn0216173 N 0.746
GE25546 Drosophila yakuba FBgn0242611 N 0.746
CSTF2 Felis catus ENSFCAG00000007000 N 0.789
CSTF2T Felis catus ENSFCAG00000013011 N 0.775
FGSG_00370 Fusarium graminearum FGSG_00370 N 0.000
FOXG_00686 Fusarium oxysporum FOXG_00686 N 0.000
FVEG_00825 Fusarium verticillioides FVEG_00825 N 0.000
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.789
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.775
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.944
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.944
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.775
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.789
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.775
112541 Helobdella robusta 112541 N 0.718
CSTF2T Homo sapiens ENSG00000177613 N 0.775
CSTF2 Homo sapiens ENSG00000101811 N 0.789
ISCW015573 Ixodes scapularis ISCW015573 N 0.789
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.944
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.775
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.789
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.775
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.789
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.789
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.789
MGG_09885 Magnaporthe oryzae MGG_09885 N 0.000
MDP0000142436 Malus x domestica MDP0000142436 N 0.958
MDP0000283046 Malus x domestica MDP0000283046 N 0.958
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.789
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.789
Cstf2 Mus musculus ENSMUSG00000031256 N 0.789
Cstf2t Mus musculus ENSMUSG00000053536 N 0.775
estExt_Genewise1Plus.C_20994 Myceliophthora thermophila estExt_Genewise1Plus.C_20994 N 0.000
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.789
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.775
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.789
fgenesh1_pg.sca_1_chr1_3_0000632 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000632 N 0.000
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.803
NCU03311 Neurospora crassa NCU03311 N 0.000
estExt_fgenesh3_kg.C_70160 Neurospora discreta estExt_fgenesh3_kg.C_70160 N 0.000
estExt_Genewise1Plus.C_50197 Neurospora tetrasperma estExt_Genewise1Plus.C_50197 N 0.000
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.718
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.789
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.775
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.789
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.775
EAT89416.2 Phaeosphaeria nodorum EAT89416.2 N 0.000
Pa_1_6970 Podospora anserina Pa_1_6970 N 0.000
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.789
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.775
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.775
ppa004010m Prunus persica ppa004010m N 0.944
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.775
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.775
RO3G_14170 Rhizopus oryzae RO3G_14170 N 0.000
SS1G_09907 Sclerotinia sclerotiorum SS1G_09907 N 0.000
CSTF2T Sorex araneus ENSSARG00000002013 N 0.775
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.775
SNOG_02685 Stagonospora nodorum SNOG_02685 N 0.000
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.775
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.775
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.789
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.789
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.775
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.775
e_gw1.4.931.1 Thielavia terrestris e_gw1.4.931.1 N 0.000
e_gw1.1.4045.1 Trichoderma atroviride e_gw1.1.4045.1 N 0.000
e_gw1.4.400.1 Trichoderma reesei e_gw1.4.400.1 N 0.000
e_gw1.7.1285.1 Trichoderma virens e_gw1.7.1285.1 N 0.000
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.789
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.775
VDAG_04254 Verticillium dahliae VDAG_04254 N 0.000
AAB50269 Xenopus laevis AAB50269 N 0.789
AAH41291 Xenopus laevis AAH41291 N 0.789
AAH80037 Xenopus laevis AAH80037 N 0.789
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.789