XM_002887343.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Al_scaffold_0002_1857 T32585_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0002_1857 RRM 10 80

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 1.000
ppa004010m Prunus persica ppa004010m N 0.944
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.944
MDP0000283046 Malus x domestica MDP0000283046 N 0.944
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.944
PK22244.1 Cannabis sativa PK22244.1 N 0.944
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.944
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.944
MDP0000142436 Malus x domestica MDP0000142436 N 0.944
mgf002767m Mimulus guttatus mgf002767m N 0.930
mgf012202m Mimulus guttatus mgf012202m N 0.930
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.930
28644.m000926 Ricinus communis 28644.m000926 N 0.930
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.915
SB05G004860 Sorghum bicolor Sb05g004860 N 0.915
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.915
MDP0000208337 Malus x domestica MDP0000208337 N 0.915
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.901
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.887
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.859
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.859
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.817
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.817
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.817
ISCW015573 Ixodes scapularis ISCW015573 N 0.803
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.803
AAH80037 Xenopus laevis AAH80037 N 0.789
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.789
Cstf2 Mus musculus ENSMUSG00000031256 N 0.789
AAH41291 Xenopus laevis AAH41291 N 0.789
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.789
AAB50269 Xenopus laevis AAB50269 N 0.789
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.789
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.789
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.789
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.789
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.789
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.789
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.789
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.789
CSTF2 Felis catus ENSFCAG00000007000 N 0.789
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.789
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.789
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.789
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.789
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.789
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.789
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.789
CSTF2 Homo sapiens ENSG00000101811 N 0.789
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.789
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.789
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.789
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.789
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.789
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.789
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.789
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.789
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.789
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.775
s_451557 Phytophthora sojae s_451557 N 0.775
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.775
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.775
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.775
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.775
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.775
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.775
Cstf2t Mus musculus ENSMUSG00000053536 N 0.775
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.775
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.775
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.775
cstf2 Danio rerio ENSDARG00000044009 N 0.775
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.775
CSTF2T Felis catus ENSFCAG00000013011 N 0.775
CSTF2T Homo sapiens ENSG00000177613 N 0.775
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.775
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.775
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.775
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.775
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.775
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.775
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.775
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.775
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.775
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.775
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.775
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.775
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.775
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.775
CSTF2T Sorex araneus ENSSARG00000002013 N 0.775
AAEL013869 Aedes aegypti AAEL013869 N 0.761
AGAP004414 Anopheles gambiae AGAP004414 N 0.761
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.761
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.761
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.761
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.761
PITG_14249 Phytophthora infestans PITG_14249 N 0.761
CstF-64 Drosophila melanogaster FBgn0027841 N 0.761
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.761
GI23336 Drosophila mojavensis FBgn0146063 N 0.761
GM17877 Drosophila sechellia FBgn0172784 N 0.761
GH18352 Drosophila grimshawi FBgn0125820 N 0.761
GG22991 Drosophila erecta FBgn0115148 N 0.761
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.761
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.761
GF16912 Drosophila ananassae FBgn0093932 N 0.761
GD19237 Drosophila simulans FBgn0190742 N 0.761
GL24357 Drosophila persimilis FBgn0161947 N 0.761
GJ10336 Drosophila virilis FBgn0197622 N 0.761
GE25546 Drosophila yakuba FBgn0242611 N 0.761
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.761
GK14167 Drosophila willistoni FBgn0216173 N 0.761
112541 Helobdella robusta 112541 N 0.761
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.746
AGAP010918 Anopheles gambiae AGAP010918 N 0.746
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.746
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.746
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.746
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.746
MDP0000295683 Malus x domestica MDP0000295683 N 0.746
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.746
CSTF2 Equus caballus ENSECAG00000009325 N 0.746
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.732
PHUM441150 Pediculus humanus PHUM441150 N 0.732
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.732
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.718
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.718
RO3G_14170 Rhizopus oryzae RO3G_14170 N 0.718
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.704
GSTUMT00004863001 Tuber melanosporum GSTUMT00004863001 N 0.704
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.704