MDP0000142436 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000142436 T57344_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000142436 RRM 98 168

Links

Other RRM family RBPs
Other Malus x domestica RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000283046 Malus x domestica MDP0000283046 N 1.000
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.986
PK22244.1 Cannabis sativa PK22244.1 N 0.986
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.986
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.986
ppa004010m Prunus persica ppa004010m N 0.986
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.986
MDP0000208337 Malus x domestica MDP0000208337 N 0.972
mgf012202m Mimulus guttatus mgf012202m N 0.958
28644.m000926 Ricinus communis 28644.m000926 N 0.958
mgf002767m Mimulus guttatus mgf002767m N 0.958
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.958
SB05G004860 Sorghum bicolor Sb05g004860 N 0.958
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.958
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.958
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.944
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.944
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.930
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.930
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.887
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.859
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.831
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.831
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.831
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.803
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.803
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.803
CSTF2 Felis catus ENSFCAG00000007000 N 0.803
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.803
CSTF2 Homo sapiens ENSG00000101811 N 0.803
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.803
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.803
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.803
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.803
Cstf2 Mus musculus ENSMUSG00000031256 N 0.803
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.803
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.803
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.803
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.803
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.803
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.803
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.803
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.803
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.803
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.803
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.803
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.803
AAH80037 Xenopus laevis AAH80037 N 0.803
MDP0000295683 Malus x domestica MDP0000295683 N 0.803
ISCW015573 Ixodes scapularis ISCW015573 N 0.803
AAB50269 Xenopus laevis AAB50269 N 0.803
AAH41291 Xenopus laevis AAH41291 N 0.803
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.803
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.803
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.803
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.803
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.803
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.803
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.789
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.789
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.789
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.789
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.789
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.789
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.789
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.789
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.789
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.789
CSTF2T Sorex araneus ENSSARG00000002013 N 0.789
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.789
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.789
cstf2 Danio rerio ENSDARG00000044009 N 0.789
CSTF2T Felis catus ENSFCAG00000013011 N 0.789
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.789
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.789
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.789
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.789
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.789
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.789
CSTF2T Homo sapiens ENSG00000177613 N 0.789
Cstf2t Mus musculus ENSMUSG00000053536 N 0.789
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.789
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.789
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.789
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.789
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.789
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.789
GE25546 Drosophila yakuba FBgn0242611 N 0.775
GK14167 Drosophila willistoni FBgn0216173 N 0.775
GJ10336 Drosophila virilis FBgn0197622 N 0.775
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.775
GD19237 Drosophila simulans FBgn0190742 N 0.775
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.775
s_451557 Phytophthora sojae s_451557 N 0.775
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.775
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.775
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.775
CstF-64 Drosophila melanogaster FBgn0027841 N 0.775
AAEL013869 Aedes aegypti AAEL013869 N 0.775
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.775
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.775
GM17877 Drosophila sechellia FBgn0172784 N 0.775
AGAP004414 Anopheles gambiae AGAP004414 N 0.775
GI23336 Drosophila mojavensis FBgn0146063 N 0.775
GL24357 Drosophila persimilis FBgn0161947 N 0.775
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.775
GH18352 Drosophila grimshawi FBgn0125820 N 0.775
GF16912 Drosophila ananassae FBgn0093932 N 0.775
GG22991 Drosophila erecta FBgn0115148 N 0.775
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.761
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.761
AGAP010918 Anopheles gambiae AGAP010918 N 0.761
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.761
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.761
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.761
PITG_14249 Phytophthora infestans PITG_14249 N 0.761
CSTF2 Equus caballus ENSECAG00000009325 N 0.761
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.746
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.746
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.746
PHUM441150 Pediculus humanus PHUM441150 N 0.746
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.746
112541 Helobdella robusta 112541 N 0.746
SNAPOd2T00016915001 Oikopleura dioica SNAPOd2T00016915001 N 0.732
ENSCING00000017649 Ciona intestinalis ENSCING00000017649 N 0.732
ENSCSAVG00000010770 Ciona savignyi ENSCSAVG00000010770 N 0.732
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.718
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.718
RO3G_14170 Rhizopus oryzae RO3G_14170 N 0.718
GSTUMT00004863001 Tuber melanosporum GSTUMT00004863001 N 0.704