CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pad-1
(
Neurospora crassa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
NCU03491
T45209_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
NCU03491T0
RRM
185
253
VFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNEDSVQAALQLTGQKLLGIPV
NCU03491T0
RRM
284
353
LYVGNIHFSITEQDLQNVFEPFGELEFVQLQKDDNGRSRGYGFVQFRDAGQAREALEKMNGFDLAGRPIR
NCU03491T0
RRM
496
552
LEDDVREEAEAKYGHVVHISLDPNSAGDIYLKFDKVQGGENAIKGLNGRYFGGRMIT
Links
Other
RRM
family RBPs
Other
Neurospora crassa
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI2G09340
Brachypodium distachyon
BRADI2G09340
N
0.000
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.000
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.000
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.000
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.000
mgf002685m
Mimulus guttatus
mgf002685m
N
0.000
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.000
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.000
ppa005056m
Prunus persica
ppa005056m
N
0.000
29726.m004014
Ricinus communis
29726.m004014
N
0.000
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.000
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.000
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.000
GRMZM2G069009
Zea mays
GRMZM2G069009
N
0.000
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.000
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.000