29726.m004014 (Ricinus communis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 29726.m004014 T04679_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29726.m004014 CCCH ZF 48 74
29726.m004014 CCCH ZF 95 120
29726.m004014 CCCH ZF 140 166
29726.m004014 CCCH ZF 301 327
29726.m004014 CCCH ZF 347 373

Links

Other CCCH ZF family RBPs
Other Ricinus communis RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.940
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.926
ppa005056m Prunus persica ppa005056m N 0.896
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.896
MDP0000319251 Malus x domestica MDP0000319251 N 0.888
MDP0000535412 Malus x domestica MDP0000535412 N 0.881
PK29685.1 Cannabis sativa PK29685.1 N 0.881
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.873
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.873
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.858
mgf002685m Mimulus guttatus mgf002685m N 0.843
mgf008934m Mimulus guttatus mgf008934m N 0.837
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.793
mgf026218m Mimulus guttatus mgf026218m N 0.791
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.785
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.785
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.778
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.778
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.770
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.770
SB03G009930 Sorghum bicolor Sb03g009930 N 0.756
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.754
ppa005229m Prunus persica ppa005229m N 0.754
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.754
MDP0000207283 Malus x domestica MDP0000207283 N 0.754
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.748
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.746
29647.m002009 Ricinus communis 29647.m002009 N 0.746
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.741
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.741
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.739
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.739
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
30128.m009030 Ricinus communis 30128.m009030 N 0.731
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.731
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.726
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.724
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.724
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.724
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.724
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.716
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.711
SB03G009920 Sorghum bicolor Sb03g009920 N 0.711
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.711
SB05G013190 Sorghum bicolor Sb05g013190 N 0.709
mgf001793m Mimulus guttatus mgf001793m N 0.709
mgf004851m Mimulus guttatus mgf004851m N 0.709
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.709
mgf010716m Mimulus guttatus mgf010716m N 0.709
ppa005813m Prunus persica ppa005813m N 0.709
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.709
PK23881.1 Cannabis sativa PK23881.1 N 0.709
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.709
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.704
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.704
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.701
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.701
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.701
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.701
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.701