ppa005056m (Prunus persica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ppa005056m T06513_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005056m CCCH ZF 47 73
ppa005056m CCCH ZF 94 119
ppa005056m CCCH ZF 139 165
ppa005056m CCCH ZF 302 328
ppa005056m CCCH ZF 348 374

Links

Other CCCH ZF family RBPs
Other Prunus persica RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000319251 Malus x domestica MDP0000319251 N 0.940
MDP0000535412 Malus x domestica MDP0000535412 N 0.933
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.910
29726.m004014 Ricinus communis 29726.m004014 N 0.896
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.874
PK29685.1 Cannabis sativa PK29685.1 N 0.866
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.866
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.851
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.843
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.836
mgf002685m Mimulus guttatus mgf002685m N 0.821
mgf008934m Mimulus guttatus mgf008934m N 0.815
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.793
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.778
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.778
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.778
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.778
mgf026218m Mimulus guttatus mgf026218m N 0.776
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.770
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.769
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.756
SB03G009930 Sorghum bicolor Sb03g009930 N 0.756
ppa005229m Prunus persica ppa005229m N 0.754
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.754
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.754
29647.m002009 Ricinus communis 29647.m002009 N 0.754
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.754
MDP0000207283 Malus x domestica MDP0000207283 N 0.746
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.741
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.741
30128.m009030 Ricinus communis 30128.m009030 N 0.739
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.739
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.739
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.733
mgf010716m Mimulus guttatus mgf010716m N 0.731
mgf004851m Mimulus guttatus mgf004851m N 0.731
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.731
mgf001793m Mimulus guttatus mgf001793m N 0.731
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.731
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.724
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.719
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.719
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.711
ppa005813m Prunus persica ppa005813m N 0.709
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.709
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.709
SB03G009920 Sorghum bicolor Sb03g009920 N 0.704
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.704
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.701