CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr8g139290
(
Medicago truncatula
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Medtr8g139290
T05806_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr8g139290.1
CCCH ZF
47
73
PDEADCIYYLRTGFCGYGSRCRFNHPR
Medtr8g139290.1
CCCH ZF
93
118
GQPVCQYYARTGSCKFGASCKYHHPR
Medtr8g139290.1
CCCH ZF
139
164
GEKECSYYVKTGQCKFGATCKFHHPQ
Medtr8g139290.1
CCCH ZF
334
360
PDQQECQHYMKTGDCKFGSTCRYHHPP
Medtr8g139290.1
CCCH ZF
378
404
PGAQPCTHYTQRGFCKFGSACKFDHPT
Medtr8g139290.2
CCCH ZF
9
35
QGAQPCTHYTQRGFCKFGSACKFDHPT
Links
Other
CCCH ZF
family RBPs
Other
Medicago truncatula
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.925
Glyma17g02720.1
Glycine max
Glyma17g02720.1
N
0.895
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.888
29726.m004014
Ricinus communis
29726.m004014
N
0.873
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.859
MDP0000319251
Malus x domestica
MDP0000319251
N
0.858
LjSGA_080419.1
Lotus japonicus
LjSGA_080419.1
N
0.852
ppa005056m
Prunus persica
ppa005056m
N
0.843
MDP0000535412
Malus x domestica
MDP0000535412
N
0.836
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.836
PK29685.1
Cannabis sativa
PK29685.1
N
0.821
mgf008934m
Mimulus guttatus
mgf008934m
N
0.793
mgf002685m
Mimulus guttatus
mgf002685m
N
0.784
AT3G06410
Arabidopsis thaliana
AT3G06410-TAIR-G
N
0.770
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.769
XM_002884531.1
Arabidopsis lyrata
fgenesh2_kg.3__645__AT3G06410.1
N
0.763
XM_002871776.1
Arabidopsis lyrata
fgenesh2_kg.6__1872__AT5G18550.1
N
0.763
AT5G18550
Arabidopsis thaliana
AT5G18550-TAIR-G
N
0.763
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.756
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.741
POPTR_0010s02310
Populus trichocarpa
POPTR_0010s02310
N
0.741
POPTR_0008s22740
Populus trichocarpa
POPTR_0008s22740
N
0.741
MDP0000172887
Malus x domestica
MDP0000172887
N
0.741
LjSGA_005717.2.1
Lotus japonicus
LjSGA_005717.2.1
N
0.741
MDP0000207283
Malus x domestica
MDP0000207283
N
0.739
ppa005229m
Prunus persica
ppa005229m
N
0.739
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.733
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.731
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.731
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.726
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.726
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.724
mgf026218m
Mimulus guttatus
mgf026218m
N
0.724
GRMZM2G069009
Zea mays
GRMZM2G069009
N
0.719
BRADI2G09340
Brachypodium distachyon
BRADI2G09340
N
0.719
SB03G009920
Sorghum bicolor
Sb03g009920
N
0.719
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.716
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.716
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.716
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.716
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.711
29647.m002009
Ricinus communis
29647.m002009
N
0.709