Medtr8g139290 (Medicago truncatula)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Medtr8g139290 T05806_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g139290.1 CCCH ZF 47 73
Medtr8g139290.1 CCCH ZF 93 118
Medtr8g139290.1 CCCH ZF 139 164
Medtr8g139290.1 CCCH ZF 334 360
Medtr8g139290.1 CCCH ZF 378 404
Medtr8g139290.2 CCCH ZF 9 35

Links

Other CCCH ZF family RBPs
Other Medicago truncatula RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.925
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.895
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.888
29726.m004014 Ricinus communis 29726.m004014 N 0.873
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.859
MDP0000319251 Malus x domestica MDP0000319251 N 0.858
LjSGA_080419.1 Lotus japonicus LjSGA_080419.1 N 0.852
ppa005056m Prunus persica ppa005056m N 0.843
MDP0000535412 Malus x domestica MDP0000535412 N 0.836
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.836
PK29685.1 Cannabis sativa PK29685.1 N 0.821
mgf008934m Mimulus guttatus mgf008934m N 0.793
mgf002685m Mimulus guttatus mgf002685m N 0.784
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.770
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.769
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.763
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.763
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.763
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.756
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.741
POPTR_0010s02310 Populus trichocarpa POPTR_0010s02310 N 0.741
POPTR_0008s22740 Populus trichocarpa POPTR_0008s22740 N 0.741
MDP0000172887 Malus x domestica MDP0000172887 N 0.741
LjSGA_005717.2.1 Lotus japonicus LjSGA_005717.2.1 N 0.741
MDP0000207283 Malus x domestica MDP0000207283 N 0.739
ppa005229m Prunus persica ppa005229m N 0.739
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.733
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.731
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.731
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.726
SB03G009930 Sorghum bicolor Sb03g009930 N 0.726
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.724
mgf026218m Mimulus guttatus mgf026218m N 0.724
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.719
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.719
SB03G009920 Sorghum bicolor Sb03g009920 N 0.719
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.716
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.716
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.716
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.716
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.711
29647.m002009 Ricinus communis 29647.m002009 N 0.709