GSVIVG00017774001 (Vitis vinifera)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GSVIVG00017774001 T03884_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00017774001 CCCH ZF 50 76
GSVIVT00017774001 CCCH ZF 97 122
GSVIVT00017774001 CCCH ZF 142 168
GSVIVT00017774001 CCCH ZF 304 330
GSVIVT00017774001 CCCH ZF 350 376

Links

Other CCCH ZF family RBPs
Other Vitis vinifera RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.896
29726.m004014 Ricinus communis 29726.m004014 N 0.896
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.867
ppa005056m Prunus persica ppa005056m N 0.866
MDP0000319251 Malus x domestica MDP0000319251 N 0.858
MDP0000535412 Malus x domestica MDP0000535412 N 0.851
PK29685.1 Cannabis sativa PK29685.1 N 0.851
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.843
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.836
mgf002685m Mimulus guttatus mgf002685m N 0.828
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.828
mgf008934m Mimulus guttatus mgf008934m N 0.815
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.807
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.793
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.785
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.785
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.785
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.784
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.776
mgf026218m Mimulus guttatus mgf026218m N 0.769
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.763
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.756
29647.m002009 Ricinus communis 29647.m002009 N 0.754
SB03G009930 Sorghum bicolor Sb03g009930 N 0.748
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.746
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.741
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.741
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.741
ppa005229m Prunus persica ppa005229m N 0.739
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.733
MDP0000207283 Malus x domestica MDP0000207283 N 0.731
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.731
SB03G009920 Sorghum bicolor Sb03g009920 N 0.726
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.726
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.726
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.724
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.716
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.716
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.709
ppa005813m Prunus persica ppa005813m N 0.709
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.709
30128.m009030 Ricinus communis 30128.m009030 N 0.709
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.709
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.709
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.709
PK23881.1 Cannabis sativa PK23881.1 N 0.709
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.701
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.701
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.701
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.701