BRADI2G09340 (Brachypodium distachyon)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BRADI2G09340 T01984_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G09340.1 CCCH ZF 55 81
BRADI2G09340.1 CCCH ZF 105 131
BRADI2G09340.1 CCCH ZF 150 176
BRADI2G09340.1 CCCH ZF 305 331
BRADI2G09340.1 CCCH ZF 351 377

Links

Other CCCH ZF family RBPs
Other Brachypodium distachyon RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G009920 Sorghum bicolor Sb03g009920 N 0.837
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.830
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.822
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.815
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.763
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.763
SB03G009930 Sorghum bicolor Sb03g009930 N 0.748
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.741
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.733
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.726
29726.m004014 Ricinus communis 29726.m004014 N 0.726
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.719
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.711
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.711
mgf002685m Mimulus guttatus mgf002685m N 0.711
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.711
PK29685.1 Cannabis sativa PK29685.1 N 0.704
MDP0000319251 Malus x domestica MDP0000319251 N 0.704
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.704