CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
SB03G009930
(
Sorghum bicolor
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Sb03g009930
T04107_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb03g009930.1
CCCH ZF
72
98
PGEADCGYYLRTGACGFGERCRYNHPR
Sb03g009930.1
CCCH ZF
121
147
QGQPVCEYYLKTGTCKFGSNCKYHHPK
Sb03g009930.1
CCCH ZF
166
192
PGEKECSYYMKTGQCKFGSTCKFHHPE
Sb03g009930.1
CCCH ZF
318
344
PGQPECQYFMRTGDCKFGNTCKYNHPR
Sb03g009930.1
CCCH ZF
364
390
PGAQPCAYYAQNGYCRYGVACKYDHPM
Links
Other
CCCH ZF
family RBPs
Other
Sorghum bicolor
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.970
GRMZM2G086994
Zea mays
GRMZM2G086994
N
0.963
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.933
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.904
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.778
SB03G009920
Sorghum bicolor
Sb03g009920
N
0.778
GRMZM2G069009
Zea mays
GRMZM2G069009
N
0.778
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.763
ppa005056m
Prunus persica
ppa005056m
N
0.756
MDP0000319251
Malus x domestica
MDP0000319251
N
0.756
29726.m004014
Ricinus communis
29726.m004014
N
0.756
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.748
BRADI2G09340
Brachypodium distachyon
BRADI2G09340
N
0.748
mgf008934m
Mimulus guttatus
mgf008934m
N
0.748
mgf002685m
Mimulus guttatus
mgf002685m
N
0.741
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.733
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.733
MDP0000535412
Malus x domestica
MDP0000535412
N
0.733
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.726
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.726
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.726
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.726
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.711
ppa005229m
Prunus persica
ppa005229m
N
0.711
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.711
PK29685.1
Cannabis sativa
PK29685.1
N
0.711
29647.m002009
Ricinus communis
29647.m002009
N
0.711
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.704
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.704
AT5G18550
Arabidopsis thaliana
AT5G18550-TAIR-G
N
0.704
MDP0000207283
Malus x domestica
MDP0000207283
N
0.704