SB03G009930 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb03g009930 T04107_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g009930.1 CCCH ZF 72 98
Sb03g009930.1 CCCH ZF 121 147
Sb03g009930.1 CCCH ZF 166 192
Sb03g009930.1 CCCH ZF 318 344
Sb03g009930.1 CCCH ZF 364 390

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.970
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.963
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.933
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.904
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.778
SB03G009920 Sorghum bicolor Sb03g009920 N 0.778
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.778
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.763
ppa005056m Prunus persica ppa005056m N 0.756
MDP0000319251 Malus x domestica MDP0000319251 N 0.756
29726.m004014 Ricinus communis 29726.m004014 N 0.756
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.748
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.748
mgf008934m Mimulus guttatus mgf008934m N 0.748
mgf002685m Mimulus guttatus mgf002685m N 0.741
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.733
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.733
MDP0000535412 Malus x domestica MDP0000535412 N 0.733
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.726
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.726
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.726
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.726
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.711
ppa005229m Prunus persica ppa005229m N 0.711
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.711
PK29685.1 Cannabis sativa PK29685.1 N 0.711
29647.m002009 Ricinus communis 29647.m002009 N 0.711
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.704
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.704
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.704
MDP0000207283 Malus x domestica MDP0000207283 N 0.704