LOC_Os01g15350 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os01g15350 T03931_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g15350.1 CCCH ZF 52 78
LOC_Os01g15350.1 CCCH ZF 102 128
LOC_Os01g15350.1 CCCH ZF 146 172
LOC_Os01g15350.1 CCCH ZF 300 326
LOC_Os01g15350.1 CCCH ZF 346 372

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G009920 Sorghum bicolor Sb03g009920 N 0.867
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.859
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.859
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.815
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.785
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.778
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.778
SB03G009930 Sorghum bicolor Sb03g009930 N 0.778
29726.m004014 Ricinus communis 29726.m004014 N 0.770
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.763
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.763
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.756
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.741
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.733
ppa005056m Prunus persica ppa005056m N 0.733
MDP0000319251 Malus x domestica MDP0000319251 N 0.726
mgf002685m Mimulus guttatus mgf002685m N 0.719
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.719
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.711
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.711
PK29685.1 Cannabis sativa PK29685.1 N 0.711
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.711
MDP0000535412 Malus x domestica MDP0000535412 N 0.711
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.711
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.704
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.704