estExt_fgenesh1_pg.C_90049 (Trichoderma atroviride)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_90049 T50646_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_90049 RRM 78 147
estExt_fgenesh1_pg.C_90049 RRM 168 238
estExt_fgenesh1_pg.C_90049 RRM 294 358

Links

Other RRM family RBPs
Other Trichoderma atroviride RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB00309.1 Alternaria brassicicola AB00309.1 N 0.845
fgenesh1_pm.00083_#_553 Aspergillus carbonarius fgenesh1_pm.00083_#_553 N 0.866
ACLA_023580 Aspergillus clavatus CADACLAG00002187 N 0.871
AFLA_067600 Aspergillus flavus CADAFLAG00008184 N 0.876
AFUA_1G12000 Aspergillus fumigatus CADAFUAG00007354 N 0.726
ANIA_10164 Aspergillus nidulans CADANIAG00001543 N 0.865
An08g04280 Aspergillus niger CADANGAG00006749 N 0.876
AO090001000353 Aspergillus oryzae CADAORAG00000317 N 0.876
ATEG_00398 Aspergillus terreus CADATEAG00007828 N 0.876
CHGG_05573 Chaetomium globosum CHGG_05573 N 0.768
CIMG_09023 Coccidioides immitis CIMG_09023 N 0.894
CPSG_01385 Coccidioides posadasii CPSG_01385 N 0.899
estExt_Genewise1.C_11570 Cochliobolus heterostrophus C5 estExt_Genewise1.C_11570 N 0.845
GLRG_08449 Colletotrichum graminicola GLRG_08449 N 0.956
estExt_Genewise1Plus.C_11264 Cryphonectria parasitica estExt_Genewise1Plus.C_11264 N 0.923
FGSG_05417 Fusarium graminearum FGSG_05417 N 0.922
FOXG_09482 Fusarium oxysporum FOXG_09482 N 0.942
FVEG_07111 Fusarium verticillioides FVEG_07111 N 0.942
HCAG_09244 Histoplasma capsulatum HCAG_09244 N 0.792
MCYG_03737 Microsporum canis MCYG_03737 N 0.880
MGYG_03339 Microsporum gypseum MGYG_03339 N 0.858
estExt_fgenesh1_kg.C_40363 Myceliophthora thermophila estExt_fgenesh1_kg.C_40363 N 0.928
estExt_Genewise1.C_140496 Mycosphaerella fijiensis estExt_Genewise1.C_140496 N 0.856
e_gw1.2.1591.1 Mycosphaerella graminicola e_gw1.2.1591.1 N 0.871
estExt_Genewise1Plus.C_sca_10_chr8_2_00705 Nectria haematococca estExt_Genewise1Plus.C_sca_10_chr8_2_00705 N 0.961
NFIA_013530 Neosartorya fischeri CADNFIAG00000800 N 0.875
NCU07874 Neurospora crassa NCU07874 N 0.928
estExt_fgenesh3_kg.C_200038 Neurospora discreta estExt_fgenesh3_kg.C_200038 N 0.873
PABG_03400 Paracoccidioides brasiliensis PABG_03400 N 0.899
Pc12g15120 Penicillium chrysogenum Pc12g15120 N 0.846
PMAA_098010 Penicillium marneffei PMAA_098010 N 0.856
EAT81850.2 Phaeosphaeria nodorum EAT81850.2 N 0.850
Pa_7_10990 Podospora anserina Pa_7_10990 N 0.928
PTRG_10065 Pyrenophora tritici repentis PTRG_10065 N 0.836
SS1G_03339 Sclerotinia sclerotiorum SS1G_03339 N 0.879
SNOG_10456 Stagonospora nodorum SNOG_10456 N 0.850
estExt_Genewise1Plus.C_32201 Thielavia terrestris estExt_Genewise1Plus.C_32201 N 0.918
estExt_GeneWisePlus.C_11433 Trichoderma reesei estExt_GeneWisePlus.C_11433 N 0.966
e_gw1.32.97.1 Trichoderma virens e_gw1.32.97.1 N 0.976
TEQG_03955 Trichophyton equinum TEQG_03955 N 0.875
TERG_05178 Trichophyton rubrum TERG_05178 N 0.875
TESG_05056 Trichophyton tonsurans TESG_05056 N 0.727
GSTUMT00010135001 Tuber melanosporum GSTUMT00010135001 N 0.879
VDBG_07004 Verticillium albo atrum VDBG_07004 N 0.913
VDAG_06648 Verticillium dahliae VDAG_06648 N 0.719