estExt_fgenesh2_pg.C_4200008 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_4200008 T50858_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_4200008 RRM 397 467

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s7140g4t1 Acyrtosiphon pisum DGIL_AUG5s7140g4t1 N 0.775
DGIL_AUG5s8592g2t1 Acyrtosiphon pisum DGIL_AUG5s8592g2t1 N 0.761
AAEL001352 Aedes aegypti AAEL001352 N 0.803
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.873
Ame_R016389 Ailuropoda melanoleuca Ame_R016389 N 0.859
Ame_R015170 Ailuropoda melanoleuca Ame_R015170 N 0.761
ENSACAG00000016928 Anolis carolinensis ENSACAG00000016928 N 0.803
ENSACAG00000016893 Anolis carolinensis ENSACAG00000016893 N 0.887
SLTM Anolis carolinensis ENSACAG00000015120 N 0.761
AGAP001298 Anopheles gambiae AGAP001298 N 0.761
amel4_ncbi_hmm13354 Apis mellifera amel4_ncbi_hmm13354 N 0.845
A7E314_BOVIN Bos taurus ENSBTAG00000035585 N 0.859
LOC787645 Bos taurus ENSBTAG00000035584 N 0.845
SLTM Bos taurus ENSBTAG00000011319 N 0.761
ENSBTAG00000007875 Bos taurus ENSBTAG00000007875 N 0.859
SAFB2 Bos taurus ENSBTAG00000001790 N 0.901
estExt_fgenesh2_pg.C_3630023 Branchiostoma floridae estExt_fgenesh2_pg.C_3630023 N 1.000
SAFB2 Callithrix jacchus ENSCJAG00000017205 N 0.901
SLTM Callithrix jacchus ENSCJAG00000020395 N 0.761
SAFB Callithrix jacchus ENSCJAG00000017081 N 0.859
SAFB Canis familiaris ENSCAFG00000018803 N 0.859
SAFB2 Canis familiaris ENSCAFG00000018814 N 0.887
SLTM Canis familiaris ENSCAFG00000016586 N 0.761
fgenesh1_pm.C_scaffold_151000005 Capitella teleta fgenesh1_pm.C_scaffold_151000005 N 0.817
SAFB Cavia porcellus ENSCPOG00000026322 N 0.873
SLTM Cavia porcellus ENSCPOG00000026109 N 0.746
SAFB2 Cavia porcellus ENSCPOG00000011394 N 0.901
SLTM Choloepus hoffmanni ENSCHOG00000001125 N 0.732
CpipJ_CPIJ012814 Culex pipiens CpipJ_CPIJ012814 N 0.789
CPIJ012814 Culex quinquefasciatus CPIJ012814 N 0.789
ENSDARG00000017150 Danio rerio ENSDARG00000017150 N 0.775
safb Danio rerio ENSDARG00000020467 N 0.901
NCBI_GNO_7700035 Daphnia pulex NCBI_GNO_7700035 N 0.704
SAFB Dasypus novemcinctus ENSDNOG00000015746 N 0.859
SLTM Dasypus novemcinctus ENSDNOG00000002975 N 0.761
Safb Dipodomys ordii ENSDORG00000016200 N 0.859
Safb2 Dipodomys ordii ENSDORG00000016199 N 0.887
Sltm Dipodomys ordii ENSDORG00000007463 N 0.775
GF16243 Drosophila ananassae FBgn0093265 N 0.775
GG11323 Drosophila erecta FBgn0103624 N 0.775
GH19115 Drosophila grimshawi FBgn0126582 N 0.775
CG6995 Drosophila melanogaster FBgn0039229 N 0.775
GI23570 Drosophila mojavensis FBgn0146296 N 0.775
GL13631 Drosophila persimilis FBgn0151236 N 0.775
GA26852-RA Drosophila pseudoobscura FBgn0248225 N 0.775
GM26630 Drosophila sechellia FBgn0181483 N 0.775
GD21133 Drosophila simulans FBgn0192585 N 0.775
GJ23544 Drosophila virilis FBgn0210641 N 0.775
GK14110 Drosophila willistoni FBgn0216116 N 0.775
GE23518 Drosophila yakuba FBgn0240697 N 0.775
SAFB Echinops telfairi ENSETEG00000018679 N 0.859
SAFB2 Echinops telfairi ENSETEG00000016756 N 0.901
SLTM Echinops telfairi ENSETEG00000008003 N 0.775
LOC100064922 Equus caballus ENSECAG00000018978 N 0.901
LOC100064953 Equus caballus ENSECAG00000018659 N 0.859
LOC100068259 Equus caballus ENSECAG00000011267 N 0.761
SLTM Erinaceus europaeus ENSEEUG00000000580 N 0.746
SAFB Felis catus ENSFCAG00000011835 N 0.859
SAFB2 Felis catus ENSFCAG00000011834 N 0.887
SLTM Felis catus ENSFCAG00000004826 N 0.746
SAFB2 Gallus gallus ENSGALG00000001948 N 0.887
SLTM Gallus gallus ENSGALG00000004192 N 0.803
SAFB2 Gallus gallus ENSGALG00000013365 N 0.845
SAFB Gasterosteus aculeatus ENSGACG00000011385 N 0.873
SAFB2 Gorilla gorilla ENSGGOG00000015093 N 0.901
SAFB Gorilla gorilla ENSGGOG00000015109 N 0.859
168846 Helobdella robusta 168846 N 0.732
SAFB Homo sapiens ENSG00000160633 N 0.859
SAFB2 Homo sapiens ENSG00000130254 N 0.901
SLTM Homo sapiens ENSG00000137776 N 0.761
estExt_fgenesh2_pg.C_sca_50258 Lottia gigantea estExt_fgenesh2_pg.C_sca_50258 N 0.817
SAFB Loxodonta africana ENSLAFG00000003840 N 0.873
SAFB2 Loxodonta africana ENSLAFG00000003836 N 0.901
SLTM Loxodonta africana ENSLAFG00000017922 N 0.746
SAFB2 Macaca mulatta ENSMMUG00000017968 N 0.901
SAFB Macaca mulatta ENSMMUG00000017970 N 0.859
SLTM Macaca mulatta ENSMMUG00000022200 N 0.761
SAFB2 Macropus eugenii ENSMEUG00000002456 N 0.873
ENSMGAG00000001051 Meleagris gallopavo ENSMGAG00000001051 N 0.887
ENSMGAG00000001101 Meleagris gallopavo ENSMGAG00000001101 N 0.845
SLTM Meleagris gallopavo ENSMGAG00000005313 N 0.803
SAFB Microcebus murinus ENSMICG00000008739 N 0.859
SLTM Microcebus murinus ENSMICG00000013069 N 0.746
ENSMODG00000001236 Monodelphis domestica ENSMODG00000001236 N 0.859
XM_001377567.1 Monodelphis domestica ENSMODG00000008794 N 0.789
SAFB2 Monodelphis domestica ENSMODG00000001178 N 0.901
Sltm Mus musculus ENSMUSG00000032212 N 0.746
Safb2 Mus musculus ENSMUSG00000042625 N 0.845
Safb Mus musculus ENSMUSG00000071054 N 0.845
SAFB2 Myotis lucifugus ENSMLUG00000001050 N 0.901
SAFB Myotis lucifugus ENSMLUG00000001081 N 0.859
nasonia_NCBI_hmm598374 Nasonia vitripennis nasonia_NCBI_hmm598374 N 0.789
estExt_fgenesh1_pg.C_1060073 Nematostella vectensis estExt_fgenesh1_pg.C_1060073 N 0.718
SAFB Ochotona princeps ENSOPRG00000011561 N 0.845
ENSOANG00000013644 Ornithorhynchus anatinus ENSOANG00000013644 N 0.915
SLTM Ornithorhynchus anatinus ENSOANG00000012311 N 0.789
SAFB Oryctolagus cuniculus ENSOCUG00000014628 N 0.859
SLTM Oryctolagus cuniculus ENSOCUG00000003327 N 0.761
SAFB2 Oryctolagus cuniculus ENSOCUG00000001592 N 0.873
SLTM Oryzias latipes ENSORLG00000008161 N 0.732
SAFB Oryzias latipes ENSORLG00000016989 N 0.887
SLTM Otolemur garnettii ENSOGAG00000011297 N 0.775
SAFB2 Otolemur garnettii ENSOGAG00000006855 N 0.901
SAFB2 Pan troglodytes ENSPTRG00000010334 N 0.901
SAFB Pan troglodytes ENSPTRG00000010335 N 0.845
SLTM Pan troglodytes ENSPTRG00000007121 N 0.761
PHUM451590 Pediculus humanus PHUM451590 N 0.775
ENSPPYG00000009428 Pongo pygmaeus ENSPPYG00000009428 N 0.859
ENSPPYG00000009427 Pongo pygmaeus ENSPPYG00000009427 N 0.901
ENSPPYG00000006515 Pongo pygmaeus ENSPPYG00000006515 N 0.761
SAFB2 Procavia capensis ENSPCAG00000006352 N 0.915
SLTM Pteropus vampyrus ENSPVAG00000015056 N 0.761
SAFB Pteropus vampyrus ENSPVAG00000004913 N 0.859
Sltm Rattus norvegicus ENSRNOG00000013708 N 0.761
SAFB2 Sorex araneus ENSSARG00000000649 N 0.915
SAFB Sorex araneus ENSSARG00000010475 N 0.859
SAFB2 Spermophilus tridecemlineatus ENSSTOG00000002758 N 0.901
ENSSSCG00000013523 Sus scrofa ENSSSCG00000013523 N 0.901
ENSSSCG00000004592 Sus scrofa ENSSSCG00000004592 N 0.746
ENSSSCG00000004591 Sus scrofa ENSSSCG00000004591 N 0.746
SAFB-1 Taeniopygia guttata ENSTGUG00000000489 N 0.887
SAFB-2 Taeniopygia guttata ENSTGUG00000000502 N 0.845
SLTM Taeniopygia guttata ENSTGUG00000006017 N 0.803
SAFB Takifugu rubripes ENSTRUG00000003567 N 0.887
SAFB Tarsius syrichta ENSTSYG00000001851 N 0.859
ENSTNIG00000015470 Tetraodon nigroviridis ENSTNIG00000015470 N 0.901
SLTM Tupaia belangeri ENSTBEG00000000945 N 0.761
SLTM Tursiops truncatus ENSTTRG00000005246 N 0.761
SAFB Tursiops truncatus ENSTTRG00000013588 N 0.859
SAFB2 Tursiops truncatus ENSTTRG00000013585 N 0.901
SAFB Vicugna pacos ENSVPAG00000012043 N 0.859
SLTM Vicugna pacos ENSVPAG00000008606 N 0.761
AAI00172 Xenopus laevis AAI00172 N 0.775
Q498L2 Xenopus laevis Q498L2 N 0.775
sltm Xenopus tropicalis ENSXETG00000010840 N 0.775