fgenesh2_pg.scaffold_6000171 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_6000171 T52273_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.734
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_6000171 RRM 68 131

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.000
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.000
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.000
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.000
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.000
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.000
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.000
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.000
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.000
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.000
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.000
PK00601.1 Cannabis sativa PK00601.1 N 0.000
PK21390.1 Cannabis sativa PK21390.1 N 0.000
PK01617.1 Cannabis sativa PK01617.1 N 0.000
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.000
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.000
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.000
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.000
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.000
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.000
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.000
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.000
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.000
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.000
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.000
MDP0000776183 Malus x domestica MDP0000776183 N 0.000
MDP0000319167 Malus x domestica MDP0000319167 N 0.000
MDP0000314338 Malus x domestica MDP0000314338 N 0.000
MDP0000191652 Malus x domestica MDP0000191652 N 0.000
MDP0000176743 Malus x domestica MDP0000176743 N 0.000
MDP0000119814 Malus x domestica MDP0000119814 N 0.000
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.000
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.000
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.000
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.000
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.000
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.000
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.000
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.000
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.000
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.000
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.000
mgf015734m Mimulus guttatus mgf015734m N 0.000
mgf011401m Mimulus guttatus mgf011401m N 0.000
mgf015234m Mimulus guttatus mgf015234m N 0.000
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.000
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.000
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.000
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.000
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.000
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.000
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.000
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.000
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.000
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.000
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.000
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.000
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.000
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.000
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.000
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.000
ppa000627m Prunus persica ppa000627m N 0.000
ppa000731m Prunus persica ppa000731m N 0.000
30143.m001164 Ricinus communis 30143.m001164 N 0.000
30143.m001162 Ricinus communis 30143.m001162 N 0.000
29595.m000292 Ricinus communis 29595.m000292 N 0.000
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.000
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.000
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.000
SB09G001090 Sorghum bicolor Sb09g001090 N 0.000
SB03G039600 Sorghum bicolor Sb03g039600 N 0.000
SB04G037410 Sorghum bicolor Sb04g037410 N 0.000
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.000
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.000
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.000
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.000
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.000
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.000