fgenesh2_pg.scaffold_6000171 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_6000171 T52273_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.734
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_6000171 RRM 68 131

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.734
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.703
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.734
RALY Anolis carolinensis ENSACAG00000008983 I 0.703
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.734
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.703
fgenesh2_pg.scaffold_9000128 Branchiostoma floridae fgenesh2_pg.scaffold_9000128 N 0.703
fgenesh2_pg.scaffold_127000006 Branchiostoma floridae fgenesh2_pg.scaffold_127000006 N 0.703
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.703
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.703
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.734
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.734
RALY Canis familiaris ENSCAFG00000007490 I 0.703
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.719
RALY Cavia porcellus ENSCPOG00000000309 I 0.703
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.719
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.703
zgc:55701 Danio rerio ENSDARG00000053810 I 0.719
zgc:55733 Danio rerio ENSDARG00000022579 I 0.750
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.703
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.734
Raly Dipodomys ordii ENSDORG00000013400 I 0.703
LOC100054239 Equus caballus ENSECAG00000012357 I 0.703
LOC100059269 Equus caballus ENSECAG00000017645 I 0.734
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.719
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.734
RALY Gallus gallus ENSGALG00000002054 I 0.703
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.719
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.734
RALY Gorilla gorilla ENSGGOG00000022709 I 0.703
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.734
HNRNPC Homo sapiens ENSG00000092199 D 0.734
RALY Homo sapiens ENSG00000125970 D 0.703
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.734
RALY Loxodonta africana ENSLAFG00000000321 I 0.703
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.719
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.734
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.734
RALY Macaca mulatta ENSMMUG00000018093 I 0.703
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.734
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.703
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.703
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.734
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.734
Raly Mus musculus ENSMUSG00000027593 I 0.703
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.734
RALY Myotis lucifugus ENSMLUG00000005330 I 0.703
RALY Ochotona princeps ENSOPRG00000008423 I 0.719
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.719
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.734
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.719
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.734
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.703
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.734
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.734
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.734
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.750
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.734
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.734
RALY Pan troglodytes ENSPTRG00000013410 I 0.703
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.703
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.734
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.703
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.734
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.734
Raly Rattus norvegicus ENSRNOG00000017405 I 0.703
HNRNPC Sorex araneus ENSSARG00000003711 I 0.734
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.703
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.719
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.703
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.703
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.703
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.750
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.734
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.750
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.734
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.734
RALY Tursiops truncatus ENSTTRG00000006590 I 0.703
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.734
RALY Vicugna pacos ENSVPAG00000000373 I 0.703
AAA60937 Xenopus laevis AAA60937 I 0.703
AAH41534 Xenopus laevis AAH41534 I 0.719
AAH71084 Xenopus laevis AAH71084 I 0.703
P19600 Xenopus laevis P19600 I 0.703
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.734