HNRNPC (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000002153 T42205_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.859
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.781
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004948 RRM 19 82
ENSTRUP00000004949 RRM 22 85

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.922
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.922
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.891
zgc:55733 Danio rerio ENSDARG00000022579 I 0.891
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.875
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.875
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.875
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.859
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.859
HNRNPC Homo sapiens ENSG00000092199 D 0.859
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.859
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.859
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.859
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.859
LOC100059269 Equus caballus ENSECAG00000017645 I 0.859
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.859
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.859
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.859
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.859
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.859
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.859
HNRNPC Sorex araneus ENSSARG00000003711 I 0.859
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.859
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.859
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.859
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.859
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.859
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.859
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.859
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.859
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.859
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.859
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.859
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.859
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.859
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.859
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.859
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.859
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.859
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.859
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.859
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.844
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.844
AAH41534 Xenopus laevis AAH41534 I 0.844
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.844
zgc:55701 Danio rerio ENSDARG00000053810 I 0.844
P19600 Xenopus laevis P19600 I 0.828
AAH71084 Xenopus laevis AAH71084 I 0.828
AAA60937 Xenopus laevis AAA60937 I 0.828
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.812
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.812
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.797
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.797
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.797
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.781
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.781
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.781
RALY Anolis carolinensis ENSACAG00000008983 I 0.766
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.766
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.766
RALY Ochotona princeps ENSOPRG00000008423 I 0.766
RALY Pan troglodytes ENSPTRG00000013410 I 0.766
RALY Macaca mulatta ENSMMUG00000018093 I 0.766
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.766
RALY Gallus gallus ENSGALG00000002054 I 0.766
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.766
RALY Homo sapiens ENSG00000125970 D 0.766
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.766
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.766
RALY Gorilla gorilla ENSGGOG00000022709 I 0.766
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.766
RALYL Vicugna pacos ENSVPAG00000008501 I 0.750
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.750
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.750
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.750
RALYL Oryzias latipes ENSORLG00000012719 I 0.750
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.750
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.750
RALYL Pan troglodytes ENSPTRG00000020381 I 0.750
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.750
RALY Cavia porcellus ENSCPOG00000000309 I 0.750
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.750
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.750
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.750
RALYL Oryzias latipes ENSORLG00000017934 I 0.750
RALYL Sorex araneus ENSSARG00000002374 I 0.750
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.750
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.750
RALYL Microcebus murinus ENSMICG00000005558 I 0.750
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.750
RALYL Echinops telfairi ENSETEG00000014028 I 0.750
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.750
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.750
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.750
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.750
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.750
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.750
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.750
Ralyl Mus musculus ENSMUSG00000039717 I 0.750
RALYL Macaca mulatta ENSMMUG00000031878 I 0.750
LOC100054239 Equus caballus ENSECAG00000012357 I 0.734
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.734
Raly Dipodomys ordii ENSDORG00000013400 I 0.734
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.734
RALY Canis familiaris ENSCAFG00000007490 I 0.734
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.734
Raly Rattus norvegicus ENSRNOG00000017405 I 0.734
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.734
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.734
RALY Tupaia belangeri ENSTBEG00000009812 I 0.734
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.734
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.734
RALY Myotis lucifugus ENSMLUG00000005330 I 0.734
RALY Tursiops truncatus ENSTTRG00000006590 I 0.734
raly Xenopus tropicalis ENSXETG00000019514 I 0.734
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.734
RALY Vicugna pacos ENSVPAG00000000373 I 0.734
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.734
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.734
LOC770541 Gallus gallus ENSGALG00000015797 I 0.734
Raly Mus musculus ENSMUSG00000027593 I 0.734
RALY Loxodonta africana ENSLAFG00000000321 I 0.734
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.734
RALY Tarsius syrichta ENSTSYG00000002598 I 0.719
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.719
raly Danio rerio ENSDARG00000059972 I 0.719
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.719
RALY Procavia capensis ENSPCAG00000016867 I 0.719
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.703