zgc:55733 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000022579 T36106_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.891
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.812
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000039157 RRM 28 91
ENSDARP00000056537 RRM 28 91

Links

Other RRM family RBPs
Other Danio rerio RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.938
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.938
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.938
zgc:55701 Danio rerio ENSDARG00000053810 I 0.906
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.891
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.891
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.891
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.891
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.891
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.891
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.891
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.891
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.891
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.891
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.891
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.891
HNRNPC Sorex araneus ENSSARG00000003711 I 0.891
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.891
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.891
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.891
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.891
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.891
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.891
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.891
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.891
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.891
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.891
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.891
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.891
LOC100059269 Equus caballus ENSECAG00000017645 I 0.891
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.891
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.891
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.891
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.891
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.891
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.891
HNRNPC Homo sapiens ENSG00000092199 D 0.891
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.875
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.875
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.875
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.875
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.875
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.875
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.859
AAH41534 Xenopus laevis AAH41534 I 0.859
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.844
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.844
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.844
AAA60937 Xenopus laevis AAA60937 I 0.844
AAH71084 Xenopus laevis AAH71084 I 0.844
P19600 Xenopus laevis P19600 I 0.844
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.828
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.828
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.828
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.812
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.812
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.812
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.812
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.812
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.781
RALYL Oryzias latipes ENSORLG00000017934 I 0.781
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.781
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.766
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.766
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.766
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.766
RALYL Vicugna pacos ENSVPAG00000008501 I 0.766
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.766
RALYL Sorex araneus ENSSARG00000002374 I 0.766
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.766
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.766
RALYL Macaca mulatta ENSMMUG00000031878 I 0.766
Ralyl Mus musculus ENSMUSG00000039717 I 0.766
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.766
RALYL Pan troglodytes ENSPTRG00000020381 I 0.766
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.766
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.766
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.766
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.766
RALYL Echinops telfairi ENSETEG00000014028 I 0.766
RALYL Oryzias latipes ENSORLG00000012719 I 0.766
RALYL Microcebus murinus ENSMICG00000005558 I 0.766
RALY Homo sapiens ENSG00000125970 D 0.750
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.750
RALY Anolis carolinensis ENSACAG00000008983 I 0.750
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.750
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.750
RALY Gallus gallus ENSGALG00000002054 I 0.750
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.750
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.750
LOC770541 Gallus gallus ENSGALG00000015797 I 0.750
Raly Rattus norvegicus ENSRNOG00000017405 I 0.750
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.750
RALY Pan troglodytes ENSPTRG00000013410 I 0.750
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.750
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.750
Raly Dipodomys ordii ENSDORG00000013400 I 0.750
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.750
LOC100054239 Equus caballus ENSECAG00000012357 I 0.750
RALY Canis familiaris ENSCAFG00000007490 I 0.750
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.750
RALY Gorilla gorilla ENSGGOG00000022709 I 0.750
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.750
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.750
Raly Mus musculus ENSMUSG00000027593 I 0.750
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.750
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.750
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.750
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.750
RALY Ochotona princeps ENSOPRG00000008423 I 0.750
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.750
RALY Macaca mulatta ENSMMUG00000018093 I 0.750
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.750
RALY Vicugna pacos ENSVPAG00000000373 I 0.750
RALY Loxodonta africana ENSLAFG00000000321 I 0.750
RALY Myotis lucifugus ENSMLUG00000005330 I 0.750
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.750
RALY Tursiops truncatus ENSTTRG00000006590 I 0.750
RALY Tupaia belangeri ENSTBEG00000009812 I 0.734
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.734
RALY Cavia porcellus ENSCPOG00000000309 I 0.734
raly Danio rerio ENSDARG00000059972 I 0.734
RALY Procavia capensis ENSPCAG00000016867 I 0.734
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.734
RALY Tarsius syrichta ENSTSYG00000002598 I 0.734
raly Xenopus tropicalis ENSXETG00000019514 I 0.734
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.734
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.719
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.719
fgenesh2_pg.scaffold_127000006 Branchiostoma floridae fgenesh2_pg.scaffold_127000006 N 0.703