ENSGACG00000018932 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000018932 T37563_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.828
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.750
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000025029 RRM 23 86

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.922
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.906
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.906
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.891
zgc:55701 Danio rerio ENSDARG00000053810 I 0.891
zgc:55733 Danio rerio ENSDARG00000022579 I 0.891
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.844
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.828
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.828
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.828
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.828
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.828
P19600 Xenopus laevis P19600 I 0.828
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.828
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.828
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.828
AAA60937 Xenopus laevis AAA60937 I 0.828
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.828
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.828
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.828
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.828
HNRNPC Sorex araneus ENSSARG00000003711 I 0.828
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.828
AAH71084 Xenopus laevis AAH71084 I 0.828
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.828
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.828
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.828
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.828
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.828
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.828
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.828
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.828
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.828
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.828
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.828
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.828
LOC100059269 Equus caballus ENSECAG00000017645 I 0.828
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.828
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.828
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.828
HNRNPC Homo sapiens ENSG00000092199 D 0.828
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.812
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.812
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.812
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.812
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.812
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.812
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.812
AAH41534 Xenopus laevis AAH41534 I 0.812
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.812
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.781
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.781
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.766
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.766
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.766
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.766
RALYL Oryzias latipes ENSORLG00000017934 I 0.766
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.750
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.750
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.750
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.750
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.750
RALYL Oryzias latipes ENSORLG00000012719 I 0.750
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.734
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.734
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.734
LOC770541 Gallus gallus ENSGALG00000015797 I 0.734
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.734
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.719
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.719
RALYL Vicugna pacos ENSVPAG00000008501 I 0.719
RALYL Pan troglodytes ENSPTRG00000020381 I 0.719
Ralyl Mus musculus ENSMUSG00000039717 I 0.719
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.719
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.719
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.719
RALYL Echinops telfairi ENSETEG00000014028 I 0.719
RALYL Macaca mulatta ENSMMUG00000031878 I 0.719
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.719
RALYL Microcebus murinus ENSMICG00000005558 I 0.719
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.719
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.719
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.719
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.719
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.719
RALYL Sorex araneus ENSSARG00000002374 I 0.719
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.719
raly Danio rerio ENSDARG00000059972 I 0.703
LOC100054239 Equus caballus ENSECAG00000012357 I 0.703
RALY Homo sapiens ENSG00000125970 D 0.703
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.703
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.703
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.703
Raly Dipodomys ordii ENSDORG00000013400 I 0.703
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.703
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.703
RALY Ochotona princeps ENSOPRG00000008423 I 0.703
RALY Pan troglodytes ENSPTRG00000013410 I 0.703
Raly Rattus norvegicus ENSRNOG00000017405 I 0.703
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.703
Raly Mus musculus ENSMUSG00000027593 I 0.703
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.703
RALY Loxodonta africana ENSLAFG00000000321 I 0.703
RALY Gorilla gorilla ENSGGOG00000022709 I 0.703
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.703
RALY Myotis lucifugus ENSMLUG00000005330 I 0.703
RALY Macaca mulatta ENSMMUG00000018093 I 0.703
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.703
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.703
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.703
raly Xenopus tropicalis ENSXETG00000019514 I 0.703
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.703
RALY Anolis carolinensis ENSACAG00000008983 I 0.703
RALY Canis familiaris ENSCAFG00000007490 I 0.703
RALY Vicugna pacos ENSVPAG00000000373 I 0.703
RALY Tursiops truncatus ENSTTRG00000006590 I 0.703
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.703
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.703
RALY Gallus gallus ENSGALG00000002054 I 0.703
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.703
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.703