ENSGACG00000017772 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000017772 T37556_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.875
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.797
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.719
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000023487 RRM 18 81
ENSGACP00000023489 RRM 28 91

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
zgc:55733 Danio rerio ENSDARG00000022579 I 0.938
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.922
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.922
zgc:55701 Danio rerio ENSDARG00000053810 I 0.922
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.922
AAH71084 Xenopus laevis AAH71084 I 0.891
P19600 Xenopus laevis P19600 I 0.891
AAA60937 Xenopus laevis AAA60937 I 0.891
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.875
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.875
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.875
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.875
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.875
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.875
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.875
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.875
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.875
HNRNPC Sorex araneus ENSSARG00000003711 I 0.875
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.875
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.875
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.875
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.875
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.875
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.875
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.875
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.875
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.875
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.875
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.875
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.875
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.875
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.875
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.875
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.875
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.875
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.875
HNRNPC Homo sapiens ENSG00000092199 D 0.875
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.875
AAH41534 Xenopus laevis AAH41534 I 0.875
LOC100059269 Equus caballus ENSECAG00000017645 I 0.875
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.875
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.875
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.859
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.859
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.859
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.859
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.859
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.859
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.828
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.828
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.812
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.812
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.812
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.797
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.797
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.797
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.797
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.797
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.781
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.766
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.750
RALYL Oryzias latipes ENSORLG00000017934 I 0.750
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.734
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.734
RALYL Vicugna pacos ENSVPAG00000008501 I 0.734
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.734
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.734
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.734
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.734
RALYL Microcebus murinus ENSMICG00000005558 I 0.734
RALYL Oryzias latipes ENSORLG00000012719 I 0.734
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.734
RALYL Macaca mulatta ENSMMUG00000031878 I 0.734
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.734
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.734
RALYL Echinops telfairi ENSETEG00000014028 I 0.734
RALYL Sorex araneus ENSSARG00000002374 I 0.734
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.734
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.734
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.734
Ralyl Mus musculus ENSMUSG00000039717 I 0.734
RALYL Pan troglodytes ENSPTRG00000020381 I 0.734
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.719
RALY Homo sapiens ENSG00000125970 D 0.719
LOC100054239 Equus caballus ENSECAG00000012357 I 0.719
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.719
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.719
raly Danio rerio ENSDARG00000059972 I 0.719
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.719
Raly Dipodomys ordii ENSDORG00000013400 I 0.719
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.719
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.719
RALY Canis familiaris ENSCAFG00000007490 I 0.719
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.719
RALY Ochotona princeps ENSOPRG00000008423 I 0.719
Raly Mus musculus ENSMUSG00000027593 I 0.719
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.719
RALY Pan troglodytes ENSPTRG00000013410 I 0.719
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.719
Raly Rattus norvegicus ENSRNOG00000017405 I 0.719
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.719
RALY Macaca mulatta ENSMMUG00000018093 I 0.719
LOC770541 Gallus gallus ENSGALG00000015797 I 0.719
RALY Gallus gallus ENSGALG00000002054 I 0.719
RALY Gorilla gorilla ENSGGOG00000022709 I 0.719
RALY Loxodonta africana ENSLAFG00000000321 I 0.719
RALY Myotis lucifugus ENSMLUG00000005330 I 0.719
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.719
RALY Anolis carolinensis ENSACAG00000008983 I 0.719
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.719
RALY Vicugna pacos ENSVPAG00000000373 I 0.719
RALY Tursiops truncatus ENSTTRG00000006590 I 0.719
raly Xenopus tropicalis ENSXETG00000019514 I 0.719
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.719
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.719
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.719
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.719
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.719
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.719
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.719
RALY Tupaia belangeri ENSTBEG00000009812 I 0.703
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.703
RALY Cavia porcellus ENSCPOG00000000309 I 0.703
RALY Procavia capensis ENSPCAG00000016867 I 0.703
RALY Tarsius syrichta ENSTSYG00000002598 I 0.703
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.703
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.703