PASA_GEN_6200011 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PASA_GEN_6200011 T53861_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_6200011 RRM 46 115
PASA_GEN_6200011 RRM 137 206

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

7 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.000
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.000
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.000
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.000
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.000
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.000
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.000
Bm1_55710 Brugia malayi Bm1_55710 N 0.000
Bm1_56100 Brugia malayi Bm1_56100 N 0.000
CBN00865 Caenorhabditis brenneri CBN00865 N 0.000
CBG00419 Caenorhabditis briggsae CBG00419 N 0.000
uaf-2 Caenorhabditis elegans Y116A8C.35 N 0.000
CRE28738 Caenorhabditis remanei CRE28738 N 0.000
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.000
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.000
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.000
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.000
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.000
u2af1 Danio rerio ENSDARG00000015325 N 0.000
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.000
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.000
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.000
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.000
LOC100057570 Equus caballus ENSECAG00000015558 N 0.000
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.000
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.000
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.000
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.000
184981 Helobdella robusta 184981 N 0.000
U2AF1L4 Homo sapiens ENSG00000161265 N 0.000
U2AF1 Homo sapiens ENSG00000160201 N 0.000
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.000
LOAG_10291 Loa loa LOAG_10291 N 0.000
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.000
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.000
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.000
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.000
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.000
Minc02944 Meloidogyne incognita Minc02944 N 0.000
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.000
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.000
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.000
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.000
U2af1 Mus musculus ENSMUSG00000061613 N 0.000
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.000
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.000
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.000
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.000
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.000
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.000
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.000
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.000
PHUM349680 Pediculus humanus PHUM349680 N 0.000
Ppa-uaf-2 Pristionchus pacificus PPA01467 N 0.000
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.000
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.000
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.000
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.000
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.000
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.000
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.000
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.000
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.000
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.000
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.000
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.000
WUBG_09132 Wuchereria bancrofti WUBG_09132 N 0.000
WUBG_02195 Wuchereria bancrofti WUBG_02195 N 0.000
AAI08559 Xenopus laevis AAI08559 N 0.000