184981 (Helobdella robusta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		184981 T00813_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
184981 CCCH ZF 13 39
184981 RRM 87 146
184981 CCCH ZF 154 180

Links

Other CCCH ZF,RRM family RBPs
Other Helobdella robusta RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw.8.587.1 Branchiostoma floridae e_gw.8.587.1 N 0.904
e_gw.8.588.1 Branchiostoma floridae e_gw.8.588.1 N 0.904
AAI08559 Xenopus laevis AAI08559 N 0.886
U2AF1 Oryzias latipes ENSORLG00000006182 N 0.877
U2AF1 Pan troglodytes ENSPTRG00000013952 N 0.877
ENSCSAVG00000000329 Ciona savignyi ENSCSAVG00000000329 N 0.877
ENSCING00000004086 Ciona intestinalis ENSCING00000004086 N 0.877
U2AF1 Cavia porcellus ENSCPOG00000004893 N 0.877
U2AF1_BOVIN Bos taurus ENSBTAG00000011645 N 0.877
U2af1 Mus musculus ENSMUSG00000061613 N 0.877
U2AF1 Loxodonta africana ENSLAFG00000011460 N 0.877
U2AF1 Monodelphis domestica ENSMODG00000021029 N 0.877
U2AF1 Microcebus murinus ENSMICG00000013835 N 0.877
U2AF1 Anolis carolinensis ENSACAG00000017836 N 0.877
U2AF1 Macaca mulatta ENSMMUG00000022769 N 0.877
U2AF1 Echinops telfairi ENSETEG00000002200 N 0.877
ENSGACG00000003454 Gasterosteus aculeatus ENSGACG00000003454 N 0.877
U2AF1 Tarsius syrichta ENSTSYG00000006799 N 0.877
Q98TR0_CHICK Gallus gallus ENSGALG00000016198 N 0.877
U2AF1 Homo sapiens ENSG00000160201 N 0.877
U2AF1 Tetraodon nigroviridis ENSTNIG00000008311 N 0.877
U2AF1 Taeniopygia guttata ENSTGUG00000005826 N 0.877
estExt_Genewise1.C_3650003 Capitella teleta estExt_Genewise1.C_3650003 N 0.868
u2af1 Danio rerio ENSDARG00000015325 N 0.868
U2AF1 Gasterosteus aculeatus ENSGACG00000014605 N 0.868
e_gw.121.26.1 Nematostella vectensis e_gw.121.26.1 N 0.860
LOC100415206 Callithrix jacchus ENSCJAG00000015843 N 0.860
U2AF1 Procavia capensis ENSPCAG00000013413 N 0.860
e_gw1.49.82.1 Lottia gigantea e_gw1.49.82.1 N 0.853
U2AF1L4 Equus caballus ENSECAG00000017941 N 0.852
U2af1l4 Mus musculus ENSMUSG00000078765 N 0.852
U2AF1L4 Sus scrofa ENSSSCG00000002896 N 0.852
U2AF1L4 Oryctolagus cuniculus ENSOCUG00000013434 N 0.852
U2af1l4 Rattus norvegicus ENSRNOG00000024497 N 0.852
U2af1 Dipodomys ordii ENSDORG00000000211 N 0.851
U2AF1 Myotis lucifugus ENSMLUG00000014756 N 0.851
LOC100057570 Equus caballus ENSECAG00000015558 N 0.851
U2AF1 Spermophilus tridecemlineatus ENSSTOG00000012766 N 0.851
U2AF1 Tupaia belangeri ENSTBEG00000000453 N 0.851
Ame_R019749 Ailuropoda melanoleuca Ame_R019749 N 0.851
U2AF1 Pteropus vampyrus ENSPVAG00000016992 N 0.851
U2AF1 Vicugna pacos ENSVPAG00000002856 N 0.851
U2AF1 Ornithorhynchus anatinus ENSOANG00000006463 N 0.851
U2AF1 Canis familiaris ENSCAFG00000010572 N 0.851
U2AF1 Meleagris gallopavo ENSMGAG00000014587 N 0.851
ENSORLG00000008857 Oryzias latipes ENSORLG00000008857 N 0.851
U2AF1L4 Loxodonta africana ENSLAFG00000012923 N 0.843
U2AF1L4 Monodelphis domestica ENSMODG00000014003 N 0.843
U2AF4_BOVIN Bos taurus ENSBTAG00000023610 N 0.843
U2AF1 Takifugu rubripes ENSTRUG00000013815 N 0.842
e_gw1.30.183.1 Daphnia pulex e_gw1.30.183.1 N 0.833
amel4_ncbi_hmm38272 Apis mellifera amel4_ncbi_hmm38272 N 0.833
U2AF1L4 Homo sapiens ENSG00000161265 N 0.826
U2AF1L4 Gorilla gorilla ENSGGOG00000016828 N 0.826
CpipJ_CPIJ016711 Culex pipiens CpipJ_CPIJ016711 N 0.825
PHUM349680 Pediculus humanus PHUM349680 N 0.825
CpipJ_CPIJ003901 Culex pipiens CpipJ_CPIJ003901 N 0.825
AAEL006713 Aedes aegypti AAEL006713 N 0.825
BGIBMGA010333 Bombyx mori BGIBMGA010333 N 0.825
nasonia_NCBI_hmm622923 Nasonia vitripennis nasonia_NCBI_hmm622923 N 0.825
Aqu1.219575 Amphimedon queenslandica Aqu1.219575 N 0.825
AGAP002956 Anopheles gambiae AGAP002956 N 0.825
CPIJ016711 Culex quinquefasciatus CPIJ016711 N 0.825
CPIJ003901 Culex quinquefasciatus CPIJ003901 N 0.825
e_gw1.35.104.1 Trichoplax adhaerens e_gw1.35.104.1 N 0.822
XP_001191705.1 Strongylocentrotus purpuratus XP_001191705.1 N 0.821
PTSG_08923 Salpingoeca rosetta PTSG_08923 N 0.807
Smp_093100 Schistosoma mansoni Smp_093100 N 0.802
U2AF1L4 Pan troglodytes ENSPTRG00000010860 N 0.798
GK14823 Drosophila willistoni FBgn0216828 N 0.798
GG24659 Drosophila erecta FBgn0116791 N 0.798
GE16227 Drosophila yakuba FBgn0233767 N 0.798
U2af38 Drosophila melanogaster FBgn0017457 N 0.798
GF24893 Drosophila ananassae FBgn0101885 N 0.798
GA17536-RA Drosophila pseudoobscura FBgn0077547 N 0.798
GD22967 Drosophila simulans FBgn0194360 N 0.798
GJ17240 Drosophila virilis FBgn0204416 N 0.798
XP_002156010.1 Hydra magnipapillata XP_002156010.1 N 0.798
GH10217 Drosophila grimshawi FBgn0117698 N 0.798
ENSGGOG00000025487 Gorilla gorilla ENSGGOG00000025487 N 0.798
GL25824 Drosophila persimilis FBgn0163408 N 0.798
GM16679 Drosophila sechellia FBgn0171592 N 0.798
GI15018 Drosophila mojavensis FBgn0137768 N 0.798
Sjc_0045900 Schistosoma japonicum Sjc_0045900 N 0.770
ENSTNIG00000013914 Tetraodon nigroviridis ENSTNIG00000013914 N 0.750
Q9YHU4_FUGRU Takifugu rubripes ENSTRUG00000010538 N 0.750
XP_002167624.1 Hydra magnipapillata XP_002167624.1 N 0.746
ISCW019664 Ixodes scapularis ISCW019664 N 0.733
SPPG_02695 Spizellomyces punctatus SPPG_02695 N 0.731
DGIL_AUG5s4512g5t1 Acyrtosiphon pisum DGIL_AUG5s4512g5t1 N 0.725
WUBG_02195 Wuchereria bancrofti WUBG_02195 N 0.716
LOAG_00486 Loa loa LOAG_00486 N 0.716
Bm1_55710 Brugia malayi Bm1_55710 N 0.716
CAOG_00458 Capsaspora owczarzaki CAOG_00458 N 0.713
LOAG_10291 Loa loa LOAG_10291 N 0.700
Bm1_56100 Brugia malayi Bm1_56100 N 0.700
WUBG_09132 Wuchereria bancrofti WUBG_09132 N 0.700