PMAA_098010 (Penicillium marneffei)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PMAA_098010 T58310_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PMAA_098010.t1 RRM 93 164
PMAA_098010.t1 RRM 185 255
PMAA_098010.t1 RRM 311 375
PMAA_098010.t2 RRM 93 164
PMAA_098010.t2 RRM 185 255
PMAA_098010.t2 RRM 311 375

Links

Other RRM family RBPs
Other Penicillium marneffei RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB00309.1 Alternaria brassicicola AB00309.1 N 0.850
fgenesh1_pm.00083_#_553 Aspergillus carbonarius fgenesh1_pm.00083_#_553 N 0.919
ACLA_023580 Aspergillus clavatus CADACLAG00002187 N 0.909
AFLA_067600 Aspergillus flavus CADAFLAG00008184 N 0.909
AFUA_1G12000 Aspergillus fumigatus CADAFUAG00007354 N 0.764
ANIA_10164 Aspergillus nidulans CADANIAG00001543 N 0.923
An08g04280 Aspergillus niger CADANGAG00006749 N 0.923
AO090001000353 Aspergillus oryzae CADAORAG00000317 N 0.909
ATEG_00398 Aspergillus terreus CADATEAG00007828 N 0.914
CHGG_05573 Chaetomium globosum CHGG_05573 N 0.750
CIMG_09023 Coccidioides immitis CIMG_09023 N 0.942
CPSG_01385 Coccidioides posadasii CPSG_01385 N 0.933
estExt_Genewise1.C_11570 Cochliobolus heterostrophus C5 estExt_Genewise1.C_11570 N 0.854
GLRG_08449 Colletotrichum graminicola GLRG_08449 N 0.870
estExt_Genewise1Plus.C_11264 Cryphonectria parasitica estExt_Genewise1Plus.C_11264 N 0.889
FGSG_05417 Fusarium graminearum FGSG_05417 N 0.846
FOXG_09482 Fusarium oxysporum FOXG_09482 N 0.870
FVEG_07111 Fusarium verticillioides FVEG_07111 N 0.870
HCAG_09244 Histoplasma capsulatum HCAG_09244 N 0.832
MCYG_03737 Microsporum canis MCYG_03737 N 0.928
MGYG_03339 Microsporum gypseum MGYG_03339 N 0.915
estExt_fgenesh1_kg.C_40363 Myceliophthora thermophila estExt_fgenesh1_kg.C_40363 N 0.894
estExt_Genewise1.C_140496 Mycosphaerella fijiensis estExt_Genewise1.C_140496 N 0.881
e_gw1.2.1591.1 Mycosphaerella graminicola e_gw1.2.1591.1 N 0.890
estExt_Genewise1Plus.C_sca_10_chr8_2_00705 Nectria haematococca estExt_Genewise1Plus.C_sca_10_chr8_2_00705 N 0.880
NFIA_013530 Neosartorya fischeri CADNFIAG00000800 N 0.928
NCU07874 Neurospora crassa NCU07874 N 0.913
estExt_fgenesh3_kg.C_200038 Neurospora discreta estExt_fgenesh3_kg.C_200038 N 0.868
PABG_03400 Paracoccidioides brasiliensis PABG_03400 N 0.923
Pc12g15120 Penicillium chrysogenum Pc12g15120 N 0.904
EAT81850.2 Phaeosphaeria nodorum EAT81850.2 N 0.850
Pa_7_10990 Podospora anserina Pa_7_10990 N 0.889
PTRG_10065 Pyrenophora tritici repentis PTRG_10065 N 0.840
SS1G_03339 Sclerotinia sclerotiorum SS1G_03339 N 0.889
SNOG_10456 Stagonospora nodorum SNOG_10456 N 0.850
estExt_Genewise1Plus.C_32201 Thielavia terrestris estExt_Genewise1Plus.C_32201 N 0.904
estExt_fgenesh1_pg.C_90049 Trichoderma atroviride estExt_fgenesh1_pg.C_90049 N 0.856
estExt_GeneWisePlus.C_11433 Trichoderma reesei estExt_GeneWisePlus.C_11433 N 0.861
e_gw1.32.97.1 Trichoderma virens e_gw1.32.97.1 N 0.875
TEQG_03955 Trichophyton equinum TEQG_03955 N 0.933
TERG_05178 Trichophyton rubrum TERG_05178 N 0.933
TESG_05056 Trichophyton tonsurans TESG_05056 N 0.762
GSTUMT00010135001 Tuber melanosporum GSTUMT00010135001 N 0.904
VDBG_07004 Verticillium albo atrum VDBG_07004 N 0.827