e_gw1.66.209.1 (Physcomitrella patens)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		e_gw1.66.209.1 T00196_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.66.209.1 CCCH ZF 12 38
e_gw1.66.209.1 CCCH ZF 95 121
e_gw1.66.209.1 KH 170 232
e_gw1.66.209.1 CCCH ZF 254 279

Links

Other CCCH ZF,KH family RBPs
Other Physcomitrella patens RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.769
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.748
ppa009199m Prunus persica ppa009199m N 0.734
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.727
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.727
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.727
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.727
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.720
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.713
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.713
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.713
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.713
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.713
mgf003025m Mimulus guttatus mgf003025m N 0.706