ppa009199m (Prunus persica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		ppa009199m T00229_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa009199m CCCH ZF 39 63
ppa009199m CCCH ZF 105 130
ppa009199m KH 177 239
ppa009199m CCCH ZF 269 294

Links

Other CCCH ZF,KH family RBPs
Other Prunus persica RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.908
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.900
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.900
ppa009316m Prunus persica ppa009316m N 0.900
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.893
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.893
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.893
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.893
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.893
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.880
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.880
MDP0000120315 Malus x domestica MDP0000120315 N 0.879
MDP0000130160 Malus x domestica MDP0000130160 N 0.879
MDP0000275117 Malus x domestica MDP0000275117 N 0.879
27843.m000161 Ricinus communis 27843.m000161 N 0.871
27843.m000162 Ricinus communis 27843.m000162 N 0.864
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.860
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.857
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.857
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.857
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.851
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.851
SB04G006450 Sorghum bicolor Sb04g006450 N 0.850
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.845
SB06G032000 Sorghum bicolor Sb06g032000 N 0.837
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.836
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.836
MDP0000217837 Malus x domestica MDP0000217837 N 0.836
mgf003025m Mimulus guttatus mgf003025m N 0.829
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.824
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.824
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.818
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.817
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.810
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.801
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.800
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.787
MDP0000176924 Malus x domestica MDP0000176924 N 0.786
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.786
MDP0000202971 Malus x domestica MDP0000202971 N 0.786
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.780
mgf010445m Mimulus guttatus mgf010445m N 0.779
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.768
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.768
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.768
mgf001428m Mimulus guttatus mgf001428m N 0.766
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.746
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.734