BGIOSIBCE005985 (Oryza indica)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		BGIOSIBCE005985 T00157_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE005985 CCCH ZF 34 60
BGIOSIBCE005985 CCCH ZF 101 126
BGIOSIBCE005985 KH 172 234
BGIOSIBCE005985 CCCH ZF 266 291

Links

Other CCCH ZF,KH family RBPs
Other Oryza indica RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 1.000
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.944
SB04G006450 Sorghum bicolor Sb04g006450 N 0.930
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.894
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.887
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.887
ppa009199m Prunus persica ppa009199m N 0.880
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.874
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.873
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.866
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.860
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.852
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.852
SB06G032000 Sorghum bicolor Sb06g032000 N 0.852
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.852
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.845
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.845
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.845
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.845
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.845
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.838
ppa009316m Prunus persica ppa009316m N 0.838
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.831
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.831
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.824
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.824
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.824
mgf003025m Mimulus guttatus mgf003025m N 0.817
27843.m000162 Ricinus communis 27843.m000162 N 0.817
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.812
27843.m000161 Ricinus communis 27843.m000161 N 0.810
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.810
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.796
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.796
MDP0000217837 Malus x domestica MDP0000217837 N 0.782
MDP0000275117 Malus x domestica MDP0000275117 N 0.775
MDP0000130160 Malus x domestica MDP0000130160 N 0.775
MDP0000120315 Malus x domestica MDP0000120315 N 0.775
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.768
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.768
mgf010445m Mimulus guttatus mgf010445m N 0.761
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.739
MDP0000202971 Malus x domestica MDP0000202971 N 0.739
MDP0000176924 Malus x domestica MDP0000176924 N 0.739
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.739
mgf001428m Mimulus guttatus mgf001428m N 0.727
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.727
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.713