estExt_gwp_gw1.C_590273 (Physcomitrella patens)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		estExt_gwp_gw1.C_590273 T00197_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_590273 CCCH ZF 49 73
estExt_gwp_gw1.C_590273 CCCH ZF 118 144
estExt_gwp_gw1.C_590273 KH 187 249
estExt_gwp_gw1.C_590273 CCCH ZF 272 297

Links

Other CCCH ZF,KH family RBPs
Other Physcomitrella patens RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.809
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.809
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.809
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.809
27843.m000161 Ricinus communis 27843.m000161 N 0.801
27843.m000162 Ricinus communis 27843.m000162 N 0.801
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.801
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.801
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.801
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.794
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.787
ppa009199m Prunus persica ppa009199m N 0.787
mgf003025m Mimulus guttatus mgf003025m N 0.773
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.769
ppa009316m Prunus persica ppa009316m N 0.766
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.766
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.752
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.748
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.745
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.732
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.727
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.727
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.727
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.725
MDP0000217837 Malus x domestica MDP0000217837 N 0.723
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.723
mgf010445m Mimulus guttatus mgf010445m N 0.716
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.716
MDP0000120315 Malus x domestica MDP0000120315 N 0.716
MDP0000130160 Malus x domestica MDP0000130160 N 0.716
MDP0000275117 Malus x domestica MDP0000275117 N 0.716
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.709
SB06G032000 Sorghum bicolor Sb06g032000 N 0.704
SB04G006450 Sorghum bicolor Sb04g006450 N 0.702