cassava23831.valid.m1 (Manihot esculenta)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		cassava23831.valid.m1 T00188_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23831.valid.m1 CCCH ZF 38 62
cassava23831.valid.m1 CCCH ZF 105 131
cassava23831.valid.m1 KH 177 239
cassava23831.valid.m1 CCCH ZF 268 293

Links

Other CCCH ZF,KH family RBPs
Other Manihot esculenta RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.943
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.936
ppa009199m Prunus persica ppa009199m N 0.908
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.887
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.887
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.887
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.879
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.879
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.872
27843.m000162 Ricinus communis 27843.m000162 N 0.872
ppa009316m Prunus persica ppa009316m N 0.872
27843.m000161 Ricinus communis 27843.m000161 N 0.865
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.860
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.860
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.858
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.858
SB04G006450 Sorghum bicolor Sb04g006450 N 0.844
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.839
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.839
mgf003025m Mimulus guttatus mgf003025m N 0.837
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.831
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.831
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.825
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.823
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.818
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.818
MDP0000217837 Malus x domestica MDP0000217837 N 0.816
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.816
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.811
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.811
SB06G032000 Sorghum bicolor Sb06g032000 N 0.810
MDP0000120315 Malus x domestica MDP0000120315 N 0.809
MDP0000130160 Malus x domestica MDP0000130160 N 0.809
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.809
MDP0000275117 Malus x domestica MDP0000275117 N 0.809
mgf010445m Mimulus guttatus mgf010445m N 0.801
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.797
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.797
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.794
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.794
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.789
mgf001428m Mimulus guttatus mgf001428m N 0.780
MDP0000202971 Malus x domestica MDP0000202971 N 0.773
MDP0000176924 Malus x domestica MDP0000176924 N 0.773
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.761
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.748
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.748
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.741