Glyma10g44330.1 (Glycine max)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Glyma10g44330.1 T00203_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma10g44330.1 CCCH ZF 34 58
Glyma10g44330.1 CCCH ZF 101 126
Glyma10g44330.1 KH 173 235
Glyma10g44330.1 CCCH ZF 264 289

Links

Other CCCH ZF,KH family RBPs
Other Glycine max RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.993
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.936
ppa009199m Prunus persica ppa009199m N 0.893
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.893
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.893
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.893
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.893
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.886
27843.m000162 Ricinus communis 27843.m000162 N 0.871
27843.m000161 Ricinus communis 27843.m000161 N 0.864
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.864
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.864
mgf003025m Mimulus guttatus mgf003025m N 0.857
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.857
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.845
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.845
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.843
ppa009316m Prunus persica ppa009316m N 0.843
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.831
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.823
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.823
SB04G006450 Sorghum bicolor Sb04g006450 N 0.821
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.818
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.807
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.807
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.803
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.803
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.803
SB06G032000 Sorghum bicolor Sb06g032000 N 0.801
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.801
MDP0000217837 Malus x domestica MDP0000217837 N 0.800
mgf010445m Mimulus guttatus mgf010445m N 0.800
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.797
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.794
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.793
MDP0000120315 Malus x domestica MDP0000120315 N 0.793
MDP0000130160 Malus x domestica MDP0000130160 N 0.793
MDP0000275117 Malus x domestica MDP0000275117 N 0.793
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.789
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.789
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.789
MDP0000176924 Malus x domestica MDP0000176924 N 0.757
MDP0000202971 Malus x domestica MDP0000202971 N 0.757
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.752
mgf001428m Mimulus guttatus mgf001428m N 0.752
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.732
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.718
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.713