BRADI3G06940 (Brachypodium distachyon)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		BRADI3G06940 T00161_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G06940.1 CCCH ZF 33 59
BRADI3G06940.1 CCCH ZF 99 125
BRADI3G06940.1 KH 171 233
BRADI3G06940.1 CCCH ZF 266 291

Links

Other CCCH ZF,KH family RBPs
Other Brachypodium distachyon RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.944
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.944
SB04G006450 Sorghum bicolor Sb04g006450 N 0.895
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.888
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.888
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.888
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.867
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.867
ppa009199m Prunus persica ppa009199m N 0.860
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.839
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.839
SB06G032000 Sorghum bicolor Sb06g032000 N 0.832
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.832
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.832
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.832
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.832
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.825
ppa009316m Prunus persica ppa009316m N 0.825
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.818
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.818
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.818
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.818
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.818
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.818
27843.m000162 Ricinus communis 27843.m000162 N 0.804
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.804
27843.m000161 Ricinus communis 27843.m000161 N 0.797
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.797
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.797
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.797
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.793
mgf003025m Mimulus guttatus mgf003025m N 0.790
MDP0000217837 Malus x domestica MDP0000217837 N 0.769
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.762
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.762
MDP0000120315 Malus x domestica MDP0000120315 N 0.755
MDP0000275117 Malus x domestica MDP0000275117 N 0.755
MDP0000130160 Malus x domestica MDP0000130160 N 0.755
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.741
mgf010445m Mimulus guttatus mgf010445m N 0.741
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.741
MDP0000202971 Malus x domestica MDP0000202971 N 0.727
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.727
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.727
MDP0000176924 Malus x domestica MDP0000176924 N 0.727
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.713
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.713