Glyma02g29360.1 (Glycine max)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Glyma02g29360.1 T00200_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma02g29360.1 CCCH ZF 33 57
Glyma02g29360.1 CCCH ZF 98 123
Glyma02g29360.1 KH 170 232
Glyma02g29360.1 CCCH ZF 262 287

Links

Other CCCH ZF,KH family RBPs
Other Glycine max RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.986
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.986
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.979
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.964
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.914
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.908
27843.m000162 Ricinus communis 27843.m000162 N 0.907
27843.m000161 Ricinus communis 27843.m000161 N 0.907
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.900
ppa009316m Prunus persica ppa009316m N 0.900
ppa009199m Prunus persica ppa009199m N 0.893
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.893
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.893
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.887
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.886
MDP0000217837 Malus x domestica MDP0000217837 N 0.850
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.845
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.845
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.837
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.836
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.832
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.831
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.823
mgf003025m Mimulus guttatus mgf003025m N 0.821
SB04G006450 Sorghum bicolor Sb04g006450 N 0.821
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.821
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.821
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.817
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.817
MDP0000176924 Malus x domestica MDP0000176924 N 0.814
MDP0000202971 Malus x domestica MDP0000202971 N 0.814
SB06G032000 Sorghum bicolor Sb06g032000 N 0.809
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.809
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.803
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.803
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.803
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.801
mgf010445m Mimulus guttatus mgf010445m N 0.800
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.797
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.793
MDP0000130160 Malus x domestica MDP0000130160 N 0.779
MDP0000120315 Malus x domestica MDP0000120315 N 0.779
MDP0000275117 Malus x domestica MDP0000275117 N 0.779
mgf001428m Mimulus guttatus mgf001428m N 0.766
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.766
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.754
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.732
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.727