mgf003025m (Mimulus guttatus)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		mgf003025m T00208_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf003025m CCCH ZF 38 62
mgf003025m CCCH ZF 108 133
mgf003025m KH 185 247
mgf003025m CCCH ZF 280 305

Links

Other CCCH ZF,KH family RBPs
Other Mimulus guttatus RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.857
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.857
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.843
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.837
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.836
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.836
ppa009199m Prunus persica ppa009199m N 0.829
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.821
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.821
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.817
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.817
mgf010445m Mimulus guttatus mgf010445m N 0.814
27843.m000162 Ricinus communis 27843.m000162 N 0.807
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.807
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.801
27843.m000161 Ricinus communis 27843.m000161 N 0.800
ppa009316m Prunus persica ppa009316m N 0.800
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.793
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.793
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.790
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.775
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.773
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.773
SB04G006450 Sorghum bicolor Sb04g006450 N 0.771
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.771
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.768
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.768
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.764
SB06G032000 Sorghum bicolor Sb06g032000 N 0.759
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.754
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.754
MDP0000217837 Malus x domestica MDP0000217837 N 0.750
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.750
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.748
mgf001428m Mimulus guttatus mgf001428m N 0.730
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.730
MDP0000275117 Malus x domestica MDP0000275117 N 0.729
MDP0000120315 Malus x domestica MDP0000120315 N 0.729
MDP0000130160 Malus x domestica MDP0000130160 N 0.729
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.723
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.721
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.711
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.711
MDP0000176924 Malus x domestica MDP0000176924 N 0.707
MDP0000202971 Malus x domestica MDP0000202971 N 0.707
e_gw1.66.209.1 Physcomitrella patens e_gw1.66.209.1 N 0.706