CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GLRG_01727
(
Colletotrichum graminicola
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GLRG_01727
T01399_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLRG_01727T0
CCCH ZF
59
83
SHVPCKFFRQGACQAGNACPFSHDL
GLRG_01727T0
CCCH ZF
88
111
ENICKYFAKGNCKFGPKCANIHVL
Links
Other
CCCH ZF
family RBPs
Other
Colletotrichum graminicola
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.980
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.980
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.980
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.960
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.960
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.959
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.959
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.940
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.939
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.939
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.939
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.939
NCU05007
Neurospora crassa
NCU05007
N
0.939
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.920
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.900
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.900
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.898
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.765
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.745
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.735
orf19.7385
Candida albicans
orf19.7385
N
0.735
ADR062W
Ashbya gossypii
ADR062W
N
0.725
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.720
23616_YPL054W
Saccharomyces paradoxus
23616_YPL054W
N
0.720
LEE1
Saccharomyces cerevisiae
YPL054W
N
0.720
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.712
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.706
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.700
estExt_fgenesh1_pg.C_120231
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_120231
N
0.700
SPCC1739.01
Schizosaccharomyces pombe
SPCC1739.01
N
0.700
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.700