e_gw1.332.33.1 (Physcomitrella patens)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		e_gw1.332.33.1 T07528_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.332.33.1 RRM 4 63
e_gw1.332.33.1 CCHC ZF 86 103

Links

Other CCHC ZF,RRM family RBPs
Other Physcomitrella patens RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 1.000
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.872
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.846
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.846
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.846
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.846
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.846
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.833
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.833
SB04G035540 Sorghum bicolor Sb04g035540 N 0.833
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.821
SB10G005960 Sorghum bicolor Sb10g005960 N 0.821
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.821
28610.m000073 Ricinus communis 28610.m000073 N 0.810
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.808
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.797
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.797
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.797
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.797
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.797
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.785
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.782
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.772
PK23390.1 Cannabis sativa PK23390.1 N 0.772
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.772
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.772
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.772
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.759
29848.m004475 Ricinus communis 29848.m004475 N 0.759
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.759
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.759
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.759
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.759
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.759
MDP0000870155 Malus x domestica MDP0000870155 N 0.747
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.747
ppa012111m Prunus persica ppa012111m N 0.747
mgf005494m Mimulus guttatus mgf005494m N 0.747
MDP0000256723 Malus x domestica MDP0000256723 N 0.747
mgf014721m Mimulus guttatus mgf014721m N 0.747
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.747
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.747
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.734
PK15383.1 Cannabis sativa PK15383.1 N 0.734
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.734
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.734
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.734
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.734
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.734
ppa012147m Prunus persica ppa012147m N 0.709