cnbp (Danio rerio)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 ENSDARG00000070922 T10087_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000095293 CCHC ZF 6 23
ENSDARP00000095293 CCHC ZF 39 53
ENSDARP00000095293 CCHC ZF 58 75
ENSDARP00000095293 CCHC ZF 82 99
ENSDARP00000095293 CCHC ZF 103 120
ENSDARP00000095293 CCHC ZF 121 138
ENSDARP00000095293 CCHC ZF 142 159

Links

Other CCHC ZF family RBPs
Other Danio rerio RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
zff9 Danio rerio ENSDARG00000045776 N 0.848
ZCCHC13 Oryzias latipes ENSORLG00000011453 N 0.848
ZCCHC13 Takifugu rubripes ENSTRUG00000007258 N 0.817
CNBP_CHICK Gallus gallus ENSGALG00000005001 N 0.792
CNBP Anolis carolinensis ENSACAG00000013192 N 0.792
cnbp Xenopus tropicalis ENSXETG00000025147 N 0.792
CNBP Taeniopygia guttata ENSTGUG00000004001 N 0.792
CNBP Spermophilus tridecemlineatus ENSSTOG00000000173 N 0.784
CNBP Sorex araneus ENSSARG00000011874 N 0.784
Cnbp Dipodomys ordii ENSDORG00000002919 N 0.784
Cnbp Rattus norvegicus ENSRNOG00000010239 N 0.784
Ame_R005612 Ailuropoda melanoleuca Ame_R005612 N 0.784
A6ML16_CALJA Callithrix jacchus ENSCJAG00000017430 N 0.784
CNBP Cavia porcellus ENSCPOG00000012816 N 0.784
CNBP Canis familiaris ENSCAFG00000004320 N 0.784
CNBP_BOVIN Bos taurus ENSBTAG00000012159 N 0.784
ENSPPYG00000013423 Pongo pygmaeus ENSPPYG00000013423 N 0.784
AAI69746 Xenopus laevis AAI69746 N 0.784
CNBP Tursiops truncatus ENSTTRG00000015266 N 0.784
CNBP Pan troglodytes ENSPTRG00000015369 N 0.784
CNBP Procavia capensis ENSPCAG00000011572 N 0.784
CNBP Macaca mulatta ENSMMUG00000011585 N 0.784
CNBP Felis catus ENSFCAG00000008665 N 0.784
CNBP Myotis lucifugus ENSMLUG00000012554 N 0.784
CNBP Macropus eugenii ENSMEUG00000011699 N 0.784
CNBP Loxodonta africana ENSLAFG00000002502 N 0.784
CNBP Homo sapiens ENSG00000169714 N 0.784
CNBP Monodelphis domestica ENSMODG00000008362 N 0.784
ENSETEG00000008408 Echinops telfairi ENSETEG00000008408 N 0.784
LOC100050146 Equus caballus ENSECAG00000009512 N 0.784
CNBP Ochotona princeps ENSOPRG00000005487 N 0.784
CNBP Otolemur garnettii ENSOGAG00000005144 N 0.784
CNBP Oryctolagus cuniculus ENSOCUG00000008696 N 0.784
Cnbp Mus musculus ENSMUSG00000030057 N 0.784
CNBP Ornithorhynchus anatinus ENSOANG00000000585 N 0.784
CNBP Gorilla gorilla ENSGGOG00000010085 N 0.784
CNBP Vicugna pacos ENSVPAG00000007138 N 0.776
CNBP Tarsius syrichta ENSTSYG00000004344 N 0.776
AAA81168 Xenopus laevis AAA81168 N 0.776
ZCCHC13 Tetraodon nigroviridis ENSTNIG00000017940 N 0.760
CAA69031 Xenopus laevis CAA69031 N 0.760
CNBP Pteropus vampyrus ENSPVAG00000015070 N 0.752
ZCCHC13 Gasterosteus aculeatus ENSGACG00000000061 N 0.744