YBX2 (Macropus eugenii)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSMEUG00000006947 T16887_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.806
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.792
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.792
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.792
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.789
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.789
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMEUP00000006333 CSD 72 142

Links

Other CSD family RBPs
Other Macropus eugenii RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.958
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.944
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.944
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.873
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.806
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.806
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.806
YBX2 Canis familiaris ENSCAFG00000016128 I 0.806
YBX2 Procavia capensis ENSPCAG00000008019 I 0.806
LOC100072964 Equus caballus ENSECAG00000009996 I 0.806
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.806
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.806
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.806
YBX2 Sus scrofa ENSSSCG00000017938 I 0.806
YBX2 Homo sapiens ENSG00000006047 D 0.792
YBX2 Sorex araneus ENSSARG00000000488 I 0.792
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.792
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.792
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.792
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.792
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.792
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.789
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.789
AAI69704 Xenopus laevis AAI69704 I 0.778
ybx2-a Xenopus laevis AAI69706 D 0.778
P45441 Xenopus laevis P45441 I 0.778
P21574 Xenopus laevis P21574 I 0.778
AAI55915 Xenopus laevis AAI55915 I 0.778
AAI55914 Xenopus laevis AAI55914 I 0.778
AAA49924 Xenopus laevis AAA49924 I 0.778
AAA49716 Xenopus laevis AAA49716 I 0.778
AAH41191 Xenopus laevis AAH41191 I 0.764
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.764
CSDA Homo sapiens ENSG00000060138 I 0.764
P21573 Xenopus laevis P21573 I 0.764
CAA42778 Xenopus laevis CAA42778 I 0.764
AAI30161 Xenopus laevis AAI30161 I 0.764
CSDA Echinops telfairi ENSETEG00000002557 I 0.764
AAI06324 Xenopus laevis AAI06324 I 0.764
AAH42217 Xenopus laevis AAH42217 I 0.764
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.764
LOC100067336 Equus caballus ENSECAG00000023592 I 0.764
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.764
Csda Dipodomys ordii ENSDORG00000009103 I 0.764
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.764
ybx1 Danio rerio ENSDARG00000004757 I 0.764
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.764
CSDA Cavia porcellus ENSCPOG00000011329 I 0.764
YB-1 Homo sapiens ENSG00000065978 D 0.764
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.764
AAA49715 Xenopus laevis AAA49715 I 0.764
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.764
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.764
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.764
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.764
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.764
LOC100065107 Equus caballus ENSECAG00000013777 I 0.764
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.764
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.764
Q00436 Xenopus laevis Q00436 I 0.764
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.764
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.764
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.764
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.764
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.764
CSDA Pan troglodytes ENSPTRG00000004681 I 0.764
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.764
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.764
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.764
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.764
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.764
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.764
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.764
YBX1 Microcebus murinus ENSMICG00000014984 I 0.764
CSDA Macaca mulatta ENSMMUG00000022469 I 0.764
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.764
Csda Mus musculus ENSMUSG00000030189 I 0.764
Ybx1 Mus musculus ENSMUSG00000028639 I 0.764
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.764
Csda Rattus norvegicus ENSRNOG00000005480 I 0.764
CSDA Sus scrofa ENSSSCG00000000633 I 0.764
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.764
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.764
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.764
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.764
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.764
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.764
CSDA Loxodonta africana ENSLAFG00000017247 I 0.764
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.764
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.764
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.764
CSDA Monodelphis domestica ENSMODG00000018248 I 0.750
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.750
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.750
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.750
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.750
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.750
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.736
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.736
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.736
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.736
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.736
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.736
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.732
CSDA Procavia capensis ENSPCAG00000001397 I 0.722
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.722
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.722
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.722
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.718
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.718
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.718
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.718
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.708
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.708
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.708
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.708
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.708
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.708
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.704
ISCW005281 Ixodes scapularis ISCW005281 I 0.704
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.704