ENSPPYG00000001466 (Pongo pygmaeus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSPPYG00000001466 T16976_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.817
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.817
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.764
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.764
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.764
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000001698 CSD 58 116

Links

Other CSD family RBPs
Other Pongo pygmaeus RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.831
Q00436 Xenopus laevis Q00436 I 0.831
CSDA Loxodonta africana ENSLAFG00000017247 I 0.831
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.831
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.831
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.831
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.831
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.831
P21573 Xenopus laevis P21573 I 0.831
CAA42778 Xenopus laevis CAA42778 I 0.831
LOC100067336 Equus caballus ENSECAG00000023592 I 0.831
AAH42217 Xenopus laevis AAH42217 I 0.831
AAH41191 Xenopus laevis AAH41191 I 0.831
AAI30161 Xenopus laevis AAI30161 I 0.831
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.831
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.831
YBX1 Microcebus murinus ENSMICG00000014984 I 0.831
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.831
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.831
ybx1 Danio rerio ENSDARG00000004757 I 0.831
CSDA Cavia porcellus ENSCPOG00000011329 I 0.831
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.831
Csda Dipodomys ordii ENSDORG00000009103 I 0.831
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.831
LOC100065107 Equus caballus ENSECAG00000013777 I 0.831
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.831
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.831
CSDA Echinops telfairi ENSETEG00000002557 I 0.831
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.831
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.831
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.831
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.831
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.831
CSDA Homo sapiens ENSG00000060138 I 0.831
YB-1 Homo sapiens ENSG00000065978 D 0.831
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.831
AAI06324 Xenopus laevis AAI06324 I 0.831
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.831
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.831
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.831
Csda Mus musculus ENSMUSG00000030189 I 0.831
CSDA Macaca mulatta ENSMMUG00000022469 I 0.831
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.831
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.831
CSDA Sus scrofa ENSSSCG00000000633 I 0.831
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.831
CSDA Pan troglodytes ENSPTRG00000004681 I 0.831
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.831
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.831
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.831
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.831
Csda Rattus norvegicus ENSRNOG00000005480 I 0.831
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.831
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.831
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.831
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.831
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.831
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.831
Ybx1 Mus musculus ENSMUSG00000028639 I 0.831
AAA49715 Xenopus laevis AAA49715 I 0.831
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.817
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.817
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.817
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.817
CSDA Monodelphis domestica ENSMODG00000018248 I 0.817
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.806
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.806
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.806
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.803
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.803
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.803
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.803
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.803
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.803
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.803
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.789
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.789
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.789
YBX2 Procavia capensis ENSPCAG00000008019 I 0.789
Ybx2 Mus musculus ENSMUSG00000018554 I 0.789
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.789
YBX2 Canis familiaris ENSCAFG00000016128 I 0.789
AAI69704 Xenopus laevis AAI69704 I 0.789
LOC100072964 Equus caballus ENSECAG00000009996 I 0.789
ybx2-a Xenopus laevis AAI69706 D 0.789
P21574 Xenopus laevis P21574 I 0.789
P45441 Xenopus laevis P45441 I 0.789
AAI55914 Xenopus laevis AAI55914 I 0.789
AAA49924 Xenopus laevis AAA49924 I 0.789
YBX2 Sus scrofa ENSSSCG00000017938 I 0.789
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.789
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.789
csda Xenopus tropicalis ENSXETG00000016239 I 0.789
AAA49716 Xenopus laevis AAA49716 I 0.789
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.789
AAI55915 Xenopus laevis AAI55915 I 0.789
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.789
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.789
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.775
YBX2 Homo sapiens ENSG00000006047 D 0.775
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.775
YBX2 Sorex araneus ENSSARG00000000488 I 0.775
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.775
CSDA Procavia capensis ENSPCAG00000001397 I 0.775
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.775
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.775
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.775
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.775
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.775
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.764
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.736
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.736
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.736
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.722
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.722
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.722
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.722
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.722
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.722
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.716
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.708
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.704
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.704