CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
FUBP3
(
Sus scrofa
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSSSCG00000005702
T19497_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000006109
KH
5
62
TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEI
ENSSSCP00000006109
KH
121
160
QERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMV
ENSSSCP00000006109
KH
187
249
SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVI
ENSSSCP00000006109
KH
288
353
EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEVARHLI
Links
Other
KH
family RBPs
Other
Sus scrofa
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.877
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.872
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.872
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.868
FUBP3
Felis catus
ENSFCAG00000005113
N
0.868
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.868
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.867
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.864
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.864
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.860
FUBP3
Homo sapiens
ENSG00000107164
N
0.856
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.856
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.856
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.856
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.856
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.856
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.856
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.856
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.852
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.840
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.829
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.829
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.821
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.821
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.821
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.813
AAH60400
Xenopus laevis
AAH60400
N
0.798
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.794
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.732
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.732
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.732
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.724
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.720
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.704
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.704
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.700