CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R003042
(
Ailuropoda melanoleuca
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Ame_R003042
T21577_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R003042
KH
79
141
TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLL
Ame_R003042
KH
164
228
IQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMV
Ame_R003042
KH
255
317
SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVI
Ame_R003042
KH
356
421
EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLI
Links
Other
KH
family RBPs
Other
Ailuropoda melanoleuca
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.996
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.992
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.988
FUBP3
Felis catus
ENSFCAG00000005113
N
0.981
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.981
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.981
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.981
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.981
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.977
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.977
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.977
FUBP3
Homo sapiens
ENSG00000107164
N
0.973
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.973
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.973
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.973
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.973
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.965
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.961
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.961
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.957
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.949
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.938
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.938
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.938
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.926
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.926
AAH60400
Xenopus laevis
AAH60400
N
0.914
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.868
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.852
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.852
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.837
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.833
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.825
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.821
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.817
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.813
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.813
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.798
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.798
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.798
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.798
FUBP1
Homo sapiens
ENSG00000162613
I
0.798
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.795
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.795
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.795
FUBP1
Equus caballus
ENSECAG00000010867
I
0.795
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.795
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.795
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.795
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.795
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.795
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.795
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.795
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.795
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.795
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.795
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.795
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.795
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.795
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.795
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.792
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.792
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.791
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.791
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.791
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.777
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.771
fubp1
Danio rerio
ENSDARG00000029248
I
0.764
AAH70981
Xenopus laevis
AAH70981
I
0.764
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.764
AAI69815
Xenopus laevis
AAI69815
I
0.764
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.761
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.760
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.758
AAH44277
Xenopus laevis
AAH44277
I
0.756
AAN77161
Xenopus laevis
AAN77161
I
0.748
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.730
FUBP3
Spermophilus tridecemlineatus
ENSSTOG00000014105
N
0.704