CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP3
(
Procavia capensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSPCAG00000001717
T19305_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000001645
KH
78
136
TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIXXX
ENSPCAP00000001645
KH
163
227
IQEILIPASKVGLVIDKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMV
ENSPCAP00000001645
KH
254
316
SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHFI
ENSPCAP00000001645
KH
355
420
EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGVPQQIEVARHLI
Links
Other
KH
family RBPs
Other
Procavia capensis
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.965
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.965
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.961
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.957
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.953
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.949
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.949
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.949
FUBP3
Felis catus
ENSFCAG00000005113
N
0.949
FUBP3
Homo sapiens
ENSG00000107164
N
0.946
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.946
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.946
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.946
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.946
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.946
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.946
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.942
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.938
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.930
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.922
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.918
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.911
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.911
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.911
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.899
AAH60400
Xenopus laevis
AAH60400
N
0.887
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.887
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.877
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.821
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.817
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.805
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.805
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.798
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.790
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.786
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.786
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.786
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.775
FUBP1
Homo sapiens
ENSG00000162613
I
0.775
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.775
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.775
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.775
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.771
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.771
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.771
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.771
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.771
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.771
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.771
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.771
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.771
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.771
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.771
FUBP1
Equus caballus
ENSECAG00000010867
I
0.771
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.771
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.771
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.771
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.771
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.771
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.771
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.768
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.768
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.767
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.767
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.767
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.754
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.748
AAI69815
Xenopus laevis
AAI69815
I
0.744
AAH70981
Xenopus laevis
AAH70981
I
0.744
fubp1
Danio rerio
ENSDARG00000029248
I
0.740
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.740
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.737
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.736
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.735
AAH44277
Xenopus laevis
AAH44277
I
0.733
AAN77161
Xenopus laevis
AAN77161
I
0.729
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.707