CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP3
(
Pteropus vampyrus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSPVAG00000001510
T19396_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000001421
KH
79
141
TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLL
ENSPVAP00000001421
KH
164
228
VQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMV
ENSPVAP00000001421
KH
255
317
SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHII
ENSPVAP00000001421
KH
356
421
EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPSLRVFTIRGVPQQIEVARHLI
Links
Other
KH
family RBPs
Other
Pteropus vampyrus
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.988
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.988
FUBP3
Felis catus
ENSFCAG00000005113
N
0.984
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.981
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.981
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.977
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.977
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.977
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.973
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.973
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.973
FUBP3
Homo sapiens
ENSG00000107164
N
0.973
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.973
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.973
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.969
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.969
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.961
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.957
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.953
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.953
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.938
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.938
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.938
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.938
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.934
AAH60400
Xenopus laevis
AAH60400
N
0.922
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.907
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.872
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.848
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.840
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.837
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.837
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.829
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.813
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.813
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.805
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.802
FUBP1
Homo sapiens
ENSG00000162613
I
0.802
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.802
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.802
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.802
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.802
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.798
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.798
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.798
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.798
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.798
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.798
FUBP1
Equus caballus
ENSECAG00000010867
I
0.798
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.798
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.798
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.798
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.798
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.798
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.798
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.798
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.798
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.798
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.798
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.798
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.795
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.795
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.795
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.795
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.795
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.780
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.775
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.771
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.767
AAH70981
Xenopus laevis
AAH70981
I
0.767
AAI69815
Xenopus laevis
AAI69815
I
0.767
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.764
fubp1
Danio rerio
ENSDARG00000029248
I
0.764
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.762
AAH44277
Xenopus laevis
AAH44277
I
0.760
AAN77161
Xenopus laevis
AAN77161
I
0.752
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.734
FUBP3
Gasterosteus aculeatus
ENSGACG00000000957
N
0.702
FUBP3
Spermophilus tridecemlineatus
ENSSTOG00000014105
N
0.700