CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A6QP83_BOVIN
(
Bos taurus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSBTAG00000013072
T18435_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000017383
KH
79
141
TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLL
ENSBTAP00000017383
KH
164
228
VQEIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMV
ENSBTAP00000017383
KH
255
317
SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVI
ENSBTAP00000017383
KH
356
421
EVTYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIEVARHLI
Links
Other
KH
family RBPs
Other
Bos taurus
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.977
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.973
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.973
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.969
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.969
FUBP3
Felis catus
ENSFCAG00000005113
N
0.969
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.969
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.961
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.961
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.957
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.957
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.957
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.953
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.953
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.953
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.953
FUBP3
Homo sapiens
ENSG00000107164
N
0.953
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.949
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.942
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.934
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.930
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.918
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.918
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.918
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.914
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.907
AAH60400
Xenopus laevis
AAH60400
N
0.903
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.856
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.848
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.840
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.837
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.829
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.829
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.813
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.809
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.802
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.802
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.795
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.795
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.795
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.795
FUBP1
Homo sapiens
ENSG00000162613
I
0.795
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.791
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.791
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.791
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.791
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.791
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.791
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.791
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.791
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.791
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.791
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.791
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.791
FUBP1
Equus caballus
ENSECAG00000010867
I
0.791
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.791
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.791
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.791
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.791
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.791
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.788
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.788
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.787
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.787
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.787
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.773
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.767
AAI69815
Xenopus laevis
AAI69815
I
0.760
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.760
AAH70981
Xenopus laevis
AAH70981
I
0.760
fubp1
Danio rerio
ENSDARG00000029248
I
0.760
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.757
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.756
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.754
AAH44277
Xenopus laevis
AAH44277
I
0.752
AAN77161
Xenopus laevis
AAN77161
I
0.744
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.726