CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP3
(
Oryzias latipes
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSORLG00000017565
T19299_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000021981
KH
83
145
TEDYKVPDRMVGFIIGRGGEQITRIQLESGCKIQIAADSGGLMERPCSLTGSPESIEQAKRLL
ENSORLP00000021981
KH
168
232
VQEMLIPASKVGLVIGRGGDTIKQLQERAGVKMMMIQDGPMPTGADKPLRISGDPYKVQAARELV
ENSORLP00000021981
KH
258
320
SLDVPVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKTDDGISPERVAMVMGQPDRCQHAVHLI
ENSORLP00000021981
KH
358
423
EVTYTIPADKCGLVIGKGGETIKSINQQSGAHVELQRNPPPSTDPNTRVFTIRGTAQQMEVARQLI
ENSORLP00000021982
KH
77
139
TEDYKVPDRMVGFIIGRGGEQITRIQLESGCKIQIAADSGGLMERPCSLTGSPESIEQAKRLL
ENSORLP00000021982
KH
162
226
VQEMLIPASKVGLVIGRGGDTIKQLQERAGVKMMMIQDGPMPTGADKPLRISGDPYKVQAARELV
ENSORLP00000021982
KH
252
314
SLDVPVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKTDDGISPERVAMVMGQPDRCQHAVHLI
ENSORLP00000021982
KH
352
417
EVTYTIPADKCGLVIGKGGETIKSINQQSGAHVELQRNPPPSTDPNTRVFTIRGTAQQMEVARQLI
Links
Other
KH
family RBPs
Other
Oryzias latipes
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.965
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.961
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.891
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
0.844
FUBP3
Meleagris gallopavo
ENSMGAG00000005342
N
0.844
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.840
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.840
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.840
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.837
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.837
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.837
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.837
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.837
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.837
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.837
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.837
FUBP3
Felis catus
ENSFCAG00000005113
N
0.837
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.837
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.837
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.837
FUBP3
Homo sapiens
ENSG00000107164
N
0.837
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.833
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.833
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.833
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.833
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.829
AAH60400
Xenopus laevis
AAH60400
N
0.829
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.829
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.821
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.821
FUBP3
Gasterosteus aculeatus
ENSGACG00000000957
N
0.818
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.817
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.813
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.805
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.805
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.774
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.767
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.767
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.767
FUBP1
Homo sapiens
ENSG00000162613
I
0.767
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.767
FUBP1
Equus caballus
ENSECAG00000010867
I
0.764
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.764
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.764
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.764
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.764
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.764
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.764
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.764
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.764
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.764
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.764
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.764
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.764
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.764
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.764
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.764
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.764
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.764
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.761
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.761
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.760
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.760
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.756
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.746
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.744
AAH70981
Xenopus laevis
AAH70981
I
0.740
AAI69815
Xenopus laevis
AAI69815
I
0.740
fubp1
Danio rerio
ENSDARG00000029248
I
0.736
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.732
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.729
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.725
AAH44277
Xenopus laevis
AAH44277
I
0.725
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.724
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.722
AAN77161
Xenopus laevis
AAN77161
I
0.721
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.715
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.710