CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP3
(
Meleagris gallopavo
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMGAG00000005342
T18980_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000005301
KH
51
113
TEDFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTPESIEQAKRLL
ENSMGAP00000005301
KH
136
200
IQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDAFKVQQAREMV
ENSMGAP00000005301
KH
227
289
SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHII
ENSMGAP00000005301
KH
328
393
EITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARHLI
Links
Other
KH
family RBPs
Other
Meleagris gallopavo
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q5ZM76_CHICK
Gallus gallus
ENSGALG00000003941
N
1.000
FUBP3
Taeniopygia guttata
ENSTGUG00000004662
N
0.984
FUBP3
Ornithorhynchus anatinus
ENSOANG00000001042
N
0.977
FUBP3
Monodelphis domestica
ENSMODG00000012105
N
0.957
fubp3
Xenopus tropicalis
ENSXETG00000001344
N
0.953
FUBP3
Microcebus murinus
ENSMICG00000015452
N
0.946
AAH60400
Xenopus laevis
AAH60400
N
0.942
Ame_R003042
Ailuropoda melanoleuca
Ame_R003042
N
0.938
FUBP3
Loxodonta africana
ENSLAFG00000011611
N
0.938
FUBP3
Pteropus vampyrus
ENSPVAG00000001510
N
0.938
FUBP3
Homo sapiens
ENSG00000107164
N
0.934
FUBP3
Canis familiaris
ENSCAFG00000019942
N
0.934
ENSPPYG00000019693
Pongo pygmaeus
ENSPPYG00000019693
N
0.934
FUBP3
Pan troglodytes
ENSPTRG00000021474
N
0.934
FUBP3
Gorilla gorilla
ENSGGOG00000011318
N
0.934
FUBP3
Macaca mulatta
ENSMMUG00000008249
N
0.934
Fubp3
Rattus norvegicus
ENSRNOG00000009139
N
0.930
FUBP3
Felis catus
ENSFCAG00000005113
N
0.930
LOC100399862
Callithrix jacchus
ENSCJAG00000020542
N
0.930
FUBP3
Ochotona princeps
ENSOPRG00000008648
N
0.930
Fubp3
Mus musculus
ENSMUSG00000026843
N
0.926
FUBP3
Cavia porcellus
ENSCPOG00000010315
N
0.926
A6QP83_BOVIN
Bos taurus
ENSBTAG00000013072
N
0.918
FUBP3
Dasypus novemcinctus
ENSDNOG00000014533
N
0.918
FUBP3
Procavia capensis
ENSPCAG00000001717
N
0.911
LOC100069755
Equus caballus
ENSECAG00000011500
N
0.899
ENSDARG00000007049
Danio rerio
ENSDARG00000007049
N
0.875
FUBP3
Myotis lucifugus
ENSMLUG00000008743
N
0.868
FUBP3
Oryzias latipes
ENSORLG00000017565
N
0.844
FUBP3
Takifugu rubripes
ENSTRUG00000018658
N
0.833
FUBP3
Takifugu rubripes
ENSTRUG00000013259
N
0.833
FUBP3
Tetraodon nigroviridis
ENSTNIG00000005858
N
0.833
FUBP3
Oryzias latipes
ENSORLG00000007103
N
0.833
FUBP3
Tetraodon nigroviridis
ENSTNIG00000009019
N
0.833
FUBP3
Gasterosteus aculeatus
ENSGACG00000016704
N
0.829
FUBP3
Sus scrofa
ENSSSCG00000005702
N
0.821
FUBP3
Otolemur garnettii
ENSOGAG00000007555
N
0.802
FUBP1
Pan troglodytes
ENSPTRG00000000888
I
0.791
FUBP1
Homo sapiens
ENSG00000162613
I
0.791
ENSPPYG00000001219
Pongo pygmaeus
ENSPPYG00000001219
I
0.791
FUBP1
Macaca mulatta
ENSMMUG00000002899
I
0.791
FUBP1
Gorilla gorilla
ENSGGOG00000027554
I
0.791
FUBP1
Canis familiaris
ENSCAFG00000020361
I
0.787
FUBP1
Choloepus hoffmanni
ENSCHOG00000008177
I
0.787
FUBP1
Loxodonta africana
ENSLAFG00000003273
I
0.787
Q08DJ3_BOVIN
Bos taurus
ENSBTAG00000008926
I
0.787
FUBP1
Equus caballus
ENSECAG00000010867
I
0.787
Fubp1
Dipodomys ordii
ENSDORG00000016534
I
0.787
FUBP1
Cavia porcellus
ENSCPOG00000002757
I
0.787
FUBP1
Callithrix jacchus
ENSCJAG00000007062
I
0.787
FUBP1
Tarsius syrichta
ENSTSYG00000000148
I
0.787
FUBP1
Otolemur garnettii
ENSOGAG00000014233
I
0.787
FUBP1
Vicugna pacos
ENSVPAG00000004709
I
0.787
FUBP1
Tursiops truncatus
ENSTTRG00000000096
I
0.787
FUBP1
Anolis carolinensis
ENSACAG00000006310
I
0.787
ENSSSCG00000003767
Sus scrofa
ENSSSCG00000003767
I
0.787
FUBP1
Myotis lucifugus
ENSMLUG00000014802
I
0.787
ENSSSCG00000003771
Sus scrofa
ENSSSCG00000003771
I
0.787
FUBP1
Ornithorhynchus anatinus
ENSOANG00000009777
I
0.787
FUBP1
Procavia capensis
ENSPCAG00000012617
I
0.787
Ame_R010564
Ailuropoda melanoleuca
Ame_R010564
I
0.784
Q5ZHW0_CHICK
Gallus gallus
ENSGALG00000008939
I
0.784
Fubp1
Mus musculus
ENSMUSG00000028034
I
0.783
FUBP1
Spermophilus tridecemlineatus
ENSSTOG00000014312
I
0.783
FUBP1
Meleagris gallopavo
ENSMGAG00000009424
I
0.779
fubp1
Xenopus tropicalis
ENSXETG00000013137
I
0.771
FUBP1
Taeniopygia guttata
ENSTGUG00000006841
I
0.769
AAH70981
Xenopus laevis
AAH70981
I
0.767
AAI69815
Xenopus laevis
AAI69815
I
0.767
ENSORLG00000003540
Oryzias latipes
ENSORLG00000003540
I
0.760
fubp1
Danio rerio
ENSDARG00000029248
I
0.760
ENSTRUG00000004615
Takifugu rubripes
ENSTRUG00000004615
I
0.760
ENSGACG00000016563
Gasterosteus aculeatus
ENSGACG00000016563
I
0.754
AAN77161
Xenopus laevis
AAN77161
I
0.752
AAH44277
Xenopus laevis
AAH44277
I
0.752
FUBP1
Oryctolagus cuniculus
ENSOCUG00000002225
I
0.741
FUBP1
Ochotona princeps
ENSOPRG00000001175
N
0.722
FUBP3
Gasterosteus aculeatus
ENSGACG00000000957
N
0.709