CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CHGG_00842
(
Chaetomium globosum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CHGG_00842
T28583_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.732
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CHGT_00842
RRM
227
297
LFVGNLAGETTDESLLKAFARWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFFQAAKEMNGKYIQSHPVV
Links
Other
RRM
family RBPs
Other
Chaetomium globosum
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCU03099
Neurospora crassa
NCU03099
I
0.986
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.986
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.986
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.944
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.944
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.944
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.915
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.915
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.901
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.901
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.901
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.887
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.887
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.859
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.845
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.831
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.831
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.789
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.789
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.761
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.761
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.761
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.761
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.746
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.746
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.746
MCYG_08625
Microsporum canis
MCYG_08625
I
0.746
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.746
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.746
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.746
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.746
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.746
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.746
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.732
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.732
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.732
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.732
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.732
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.732
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.732
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.732
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.718
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.718
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.718
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.718