CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDAG_04412
(
Verticillium dahliae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
VDAG_04412
T31406_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.746
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDAG_04412T0
RRM
241
311
LFVGNLAGEVTDESLLKAFARWPSVAKARVVRDKRTSKSKGFGFVAFSDADDFFQAAKEMNGKYIQSHPVV
Links
Other
RRM
family RBPs
Other
Verticillium dahliae
RBPs
47 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.901
CHGG_00842
Chaetomium globosum
CHGG_00842
I
0.887
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.887
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.887
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.873
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.873
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.873
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.873
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.873
NCU03099
Neurospora crassa
NCU03099
I
0.873
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.859
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.859
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.859
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.859
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.845
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.845
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.831
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.789
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.789
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.789
MCYG_08625
Microsporum canis
MCYG_08625
I
0.775
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.775
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.775
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.775
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.775
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.761
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.761
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.761
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.761
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.761
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.761
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.761
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.761
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.761
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.746
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.746
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.746
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.746
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.746
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.746
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.746
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.746
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.746
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.746
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.746
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.718
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.718