VDAG_04412 (Verticillium dahliae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 VDAG_04412 T31406_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CADANIAG00004740
M241_0.6 		Aspergillus nidulans UACUAMK RNAcompete
Ray et al.(2013)
RNCMPT00287 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
VDAG_04412T0 RRM 241 311

Links

Other RRM family RBPs
Other Verticillium dahliae RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GLRG_01583 Colletotrichum graminicola GLRG_01583 I 0.901
CHGG_00842 Chaetomium globosum CHGG_00842 I 0.887
gw1.33.170.1 Trichoderma virens gw1.33.170.1 I 0.887
Pa_1_11770 Podospora anserina Pa_1_11770 I 0.887
e_gw1.3.1071.1 Trichoderma reesei e_gw1.3.1071.1 I 0.873
estExt_fgenesh3_kg.C_70295 Neurospora discreta estExt_fgenesh3_kg.C_70295 I 0.873
estExt_Genewise1Plus.C_50687 Neurospora tetrasperma estExt_Genewise1Plus.C_50687 I 0.873
e_gw1.1.2591.1 Trichoderma atroviride e_gw1.1.2591.1 I 0.873
fgenesh1_pg.sca_1_chr1_3_0000264 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000264 I 0.873
NCU03099 Neurospora crassa NCU03099 I 0.873
FGSG_11902 Fusarium graminearum FGSG_11902 I 0.859
gw1.6.1720.1 Cryphonectria parasitica gw1.6.1720.1 I 0.859
FOXG_00280 Fusarium oxysporum FOXG_00280 I 0.859
FVEG_01237 Fusarium verticillioides FVEG_01237 I 0.859
estExt_fgenesh1_pg.C_20919 Myceliophthora thermophila estExt_fgenesh1_pg.C_20919 I 0.845
estExt_Genewise1Plus.C_13260 Thielavia terrestris estExt_Genewise1Plus.C_13260 I 0.845
MGG_01274 Magnaporthe oryzae MGG_01274 I 0.831
GSTUMT00010522001 Tuber melanosporum GSTUMT00010522001 I 0.789
BC1G_02746 Botrytis cinerea BC1G_02746 I 0.789
SS1G_09871 Sclerotinia sclerotiorum SS1G_09871 I 0.789
MCYG_08625 Microsporum canis MCYG_08625 I 0.775
AFLA_036830 Aspergillus flavus CADAFLAG00003057 I 0.775
UREG_01087 Uncinocarpus reesii UREG_01087 I 0.775
fgenesh1_pm.00118_#_519 Aspergillus carbonarius fgenesh1_pm.00118_#_519 I 0.775
AO090003000122 Aspergillus oryzae CADAORAG00000798 I 0.775
TRV_04123 Trichophyton verrucosum TRV_04123 I 0.761
TEQG_04534 Trichophyton equinum TEQG_04534 I 0.761
TERG_02769 Trichophyton rubrum TERG_02769 I 0.761
TESG_08545 Trichophyton tonsurans TESG_08545 I 0.761
PABG_01757 Paracoccidioides brasiliensis PABG_01757 I 0.761
ARB_07912 Arthroderma benhamiae ARB_07912 I 0.761
ATEG_05852 Aspergillus terreus CADATEAG00002953 I 0.761
An11g02050 Aspergillus niger CADANGAG00008541 I 0.761
ACLA_082600 Aspergillus clavatus CADACLAG00007506 I 0.761
AB09441.1 Alternaria brassicicola AB09441.1 I 0.746
CIMG_01152 Coccidioides immitis CIMG_01152 I 0.746
AFUA_6G08040 Aspergillus fumigatus CADAFUAG00002290 I 0.746
estExt_Genewise1.C_320079 Cochliobolus heterostrophus C5 estExt_Genewise1.C_320079 I 0.746
BDBG_03382 Blastomyces dermatitidis BDBG_03382 I 0.746
PTRG_02274 Pyrenophora tritici repentis PTRG_02274 I 0.746
HCAG_05883 Histoplasma capsulatum HCAG_05883 I 0.746
CADANIAG00004740 Aspergillus nidulans CADANIAG00004740 D 0.746
Pc12g10950 Penicillium chrysogenum Pc12g10950 I 0.746
CPSG_02060 Coccidioides posadasii CPSG_02060 I 0.746
NFIA_053730 Neosartorya fischeri CADNFIAG00004585 I 0.746
SNOG_15877 Stagonospora nodorum SNOG_15877 I 0.718
EAT76715.1 Phaeosphaeria nodorum EAT76715.1 I 0.718